Analysis of interatomic Contacts of Structural Units in PDB entry:
6V3H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V3H entry

There is 1 chain in PDB entry 6V3H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 22SER 1282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 6V3H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 77Right-handed alpha
Helix 2
AA2
A
92 103Right-handed alpha
Helix 3
AA3
A
103 111Right-handed alpha
Helix 4
AA4
A
113 130Right-handed alpha
Helix 5
AA5
A
132 135Right-handed 310
Helix 6
AA6
A
162 173Right-handed alpha
Helix 7
AA7
A
185 188Right-handed 310
Helix 8
AA8
A
193 197Right-handed 310
Helix 9
AA9
A
198 207Right-handed alpha
Helix 10
AB1
A
208 212Right-handed 310
Helix 11
AB2
A
255 260Right-handed alpha
Helix 12
AB3
A
283 312Right-handed alpha
Helix 13
AB4
A
333 351Right-handed alpha
Helix 14
AB5
A
351 368Right-handed alpha
Helix 15
AB6
A
369 373Right-handed 310
Helix 16
AB7
A
378 384Right-handed alpha
Helix 17
AB8
A
388 402Right-handed alpha
Helix 18
AB9
A
433 436Right-handed 310
Helix 19
AC1
A
437 453Right-handed alpha
Helix 20
AC2
A
466 470Right-handed 310
Helix 21
AC3
A
481 485Right-handed 310
Helix 22
AC4
A
489 495Right-handed 310
Helix 23
AC5
A
497 502Right-handed alpha
Helix 24
AC6
A
517 528Right-handed alpha
Helix 25
AC7
A
551 555Right-handed alpha
Helix 26
AC8
A
563 567Right-handed 310
Helix 27
AC9
A
584 607Right-handed alpha
Helix 28
AD1
A
619 626Right-handed alpha
Helix 29
AD2
A
632 637Right-handed alpha
Helix 30
AD3
A
637 651Right-handed alpha
Helix 31
AD4
A
659 664Right-handed alpha
Helix 32
AD5
A
665 690Right-handed alpha
Helix 33
AD6
A
695 700Right-handed alpha
Helix 34
AD7
A
701 724Right-handed alpha
Helix 35
AD8
A
731 762Right-handed alpha
Helix 36
AD9
A
766 788Right-handed alpha
Helix 37
AE1
A
789 804Right-handed alpha
Helix 38
AE2
A
826 835Right-handed alpha
Helix 39
AE3
A
835 841Right-handed alpha
Helix 40
AE4
A
845 864Right-handed alpha
Helix 41
AE5
A
872 877Right-handed alpha
Helix 42
AE6
A
882 894Right-handed alpha
Helix 43
AE7
A
912 918Right-handed alpha
Helix 44
AE8
A
929 939Right-handed alpha
Helix 45
AE9
A
952 962Right-handed alpha
Helix 46
AF1
A
963 966Right-handed 310
Helix 47
AF2
A
1005 1017Right-handed alpha
Helix 48
AF3
A
1028 1033Right-handed alpha
Helix 49
AF4
A
1059 1082Right-handed alpha
Helix 50
AF5
A
1099 1104Right-handed alpha
Helix 51
AF6
A
1105 1107Right-handed 310
Helix 52
AF7
A
1108 1132Right-handed alpha
Helix 53
AF8
A
1135 1161Right-handed alpha
Helix 54
AF9
A
1165 1179Right-handed alpha
Helix 55
AG1
A
1179 1192Right-handed alpha
Helix 56
AG2
A
1197 1227Right-handed alpha
Helix 57
AG3
A
1228 1231Right-handed 310
Helix 58
AG4
A
1233 1240Right-handed alpha
Helix 59
AG5
A
1240 1257Right-handed alpha
Helix 60
AG6
A
1257 1267Right-handed alpha
Helix 61
AG7
A
1271 1282Right-handed alpha
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There are 13 sheets in PDB entry 6V3H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 37first strand
Strand 2
A
55 61anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
88 89anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 143first strand
Strand 2
A
152 161anti-parallel
Strand 3
A
217 223parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 177first strand
Strand 2
A
182 183anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 278first strand
Strand 2
A
281 282anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 488first strand
Strand 2
A
569 576anti-parallel
Strand 3
A
556 557anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 488first strand
Strand 2
A
569 576anti-parallel
Strand 3
A
406 414anti-parallel
Strand 4
A
611 616anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 423first strand
Strand 2
A
429 432anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 458first strand
Strand 2
A
463 465anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
505 509first strand
Strand 2
A
512 516anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
946 948first strand
Strand 2
A
1045 1054anti-parallel
Strand 3
A
1037 1039anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
946 948first strand
Strand 2
A
1045 1054anti-parallel
Strand 3
A
899 904anti-parallel
Strand 4
A
1093 1096anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
980 981first strand
Strand 2
A
969 970anti-parallel
Strand 3
A
992 993anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il