Analysis of interatomic Contacts of Structural Units in PDB entry:
6V3Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V3Q entry

There are 4 chains in PDB entry 6V3Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0GLY 160
A
 LEU 162PRO 225
B
 ALA 0GLY 160
B
 LEU 162PRO 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6V3Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 66Right-handed alpha
Helix 2
AA2
A
80 85Right-handed alpha
Helix 3
AA3
A
86 93Right-handed alpha
Helix 4
AA4
A
100 106Right-handed alpha
Helix 5
AA5
A
161 163Right-handed 310
Helix 6
AA6
A
181 193Right-handed alpha
Helix 7
AA7
A
209 224Right-handed alpha
Helix 8
AA8
B
52 66Right-handed alpha
Helix 9
AA9
B
80 85Right-handed alpha
Helix 10
AB1
B
86 93Right-handed alpha
Helix 11
AB2
B
100 107Right-handed alpha
Helix 12
AB3
B
108 111Right-handed 310
Helix 13
AB4
B
161 163Right-handed 310
Helix 14
AB5
B
181 193Right-handed alpha
Helix 15
AB6
B
209 224Right-handed alpha
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There are 4 sheets in PDB entry 6V3Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 13first strand
Strand 2
A
16 24anti-parallel
Strand 3
A
30 40anti-parallel
Strand 4
A
43 47anti-parallel
Strand 5
A
71 75parallel
Strand 6
A
96 99parallel
Strand 7
A
117 118parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
134 136anti-parallel
Strand 3
A
148 151anti-parallel
Strand 4
A
156 160anti-parallel
Strand 5
A
198 201parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 13first strand
Strand 2
B
16 24anti-parallel
Strand 3
B
30 40anti-parallel
Strand 4
B
43 47anti-parallel
Strand 5
B
71 76parallel
Strand 6
B
96 99parallel
Strand 7
B
117 118parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 127first strand
Strand 2
B
134 136anti-parallel
Strand 3
B
148 151anti-parallel
Strand 4
B
156 160anti-parallel
Strand 5
B
198 201parallel
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