Analysis of interatomic Contacts of Structural Units in PDB entry:
6V3T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V3T entry

There are 6 chains in PDB entry 6V3T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 213
B	MET 1	SER 213
C	MET 1	SER 213
D	MET 1	SER 213
E	MET 1	SER 213
G	MET 1	SER 213

There are 64 helices in PDB entry 6V3T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	9	Right-handed 310
Helix 2	AA2	A	10	20	Right-handed alpha
Helix 3	AA3	A	21	24	Right-handed 310
Helix 4	AA4	A	25	32	Right-handed alpha
Helix 5	AA5	A	40	53	Right-handed alpha
Helix 6	AA6	A	79	91	Right-handed alpha
Helix 7	AA7	A	93	109	Right-handed alpha
Helix 8	AA8	A	111	116	Right-handed alpha
Helix 9	AA9	A	137	153	Right-handed alpha
Helix 10	AB1	A	164	174	Right-handed alpha
Helix 11	AB2	A	185	187	Right-handed 310
Helix 12	AB3	B	7	9	Right-handed 310
Helix 13	AB4	B	10	20	Right-handed alpha
Helix 14	AB5	B	21	24	Right-handed 310
Helix 15	AB6	B	25	32	Right-handed alpha
Helix 16	AB7	B	40	53	Right-handed alpha
Helix 17	AB8	B	79	91	Right-handed alpha
Helix 18	AB9	B	93	109	Right-handed alpha
Helix 19	AC1	B	111	116	Right-handed alpha
Helix 20	AC2	B	137	153	Right-handed alpha
Helix 21	AC3	B	164	175	Right-handed alpha
Helix 22	AC4	B	185	187	Right-handed 310
Helix 23	AC5	C	7	9	Right-handed 310
Helix 24	AC6	C	10	20	Right-handed alpha
Helix 25	AC7	C	21	24	Right-handed 310
Helix 26	AC8	C	25	30	Right-handed alpha
Helix 27	AC9	C	40	52	Right-handed alpha
Helix 28	AD1	C	79	90	Right-handed alpha
Helix 29	AD2	C	93	109	Right-handed alpha
Helix 30	AD3	C	111	116	Right-handed alpha
Helix 31	AD4	C	137	153	Right-handed alpha
Helix 32	AD5	C	164	174	Right-handed alpha
Helix 33	AD6	C	185	187	Right-handed 310
Helix 34	AD7	D	7	9	Right-handed 310
Helix 35	AD8	D	10	20	Right-handed alpha
Helix 36	AD9	D	21	24	Right-handed 310
Helix 37	AE1	D	25	32	Right-handed alpha
Helix 38	AE2	D	40	53	Right-handed alpha
Helix 39	AE3	D	79	91	Right-handed alpha
Helix 40	AE4	D	93	109	Right-handed alpha
Helix 41	AE5	D	111	117	Right-handed alpha
Helix 42	AE6	D	137	153	Right-handed alpha
Helix 43	AE7	D	164	175	Right-handed alpha
Helix 44	AE8	D	185	187	Right-handed 310
Helix 45	AE9	E	7	9	Right-handed 310
Helix 46	AF1	E	10	22	Right-handed alpha
Helix 47	AF2	E	25	32	Right-handed alpha
Helix 48	AF3	E	40	53	Right-handed alpha
Helix 49	AF4	E	79	88	Right-handed alpha
Helix 50	AF5	E	93	109	Right-handed alpha
Helix 51	AF6	E	111	116	Right-handed alpha
Helix 52	AF7	E	137	153	Right-handed alpha
Helix 53	AF8	E	164	174	Right-handed alpha
Helix 54	AF9	E	185	187	Right-handed 310
Helix 55	AG1	G	7	9	Right-handed 310
Helix 56	AG2	G	10	22	Right-handed alpha
Helix 57	AG3	G	25	32	Right-handed alpha
Helix 58	AG4	G	40	53	Right-handed alpha
Helix 59	AG5	G	79	91	Right-handed alpha
Helix 60	AG6	G	93	109	Right-handed alpha
Helix 61	AG7	G	111	116	Right-handed alpha
Helix 62	AG8	G	137	153	Right-handed alpha
Helix 63	AG9	G	164	174	Right-handed alpha
Helix 64	AH1	G	185	187	Right-handed 310

There are 6 sheets in PDB entry 6V3T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	5	first strand
Strand 2	A	57	60	anti-parallel
Strand 3	A	67	77	anti-parallel
Strand 4	A	120	129	anti-parallel
Strand 5	A	157	162	parallel
Strand 6	A	204	211	anti-parallel
Strand 7	A	177	183	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	57	60	anti-parallel
Strand 3	B	67	77	anti-parallel
Strand 4	B	120	129	anti-parallel
Strand 5	B	157	162	parallel
Strand 6	B	204	211	anti-parallel
Strand 7	B	177	183	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	5	first strand
Strand 2	C	57	60	anti-parallel
Strand 3	C	67	77	anti-parallel
Strand 4	C	120	129	anti-parallel
Strand 5	C	157	162	parallel
Strand 6	C	204	211	anti-parallel
Strand 7	C	177	183	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	5	first strand
Strand 2	D	57	60	anti-parallel
Strand 3	D	67	77	anti-parallel
Strand 4	D	120	129	anti-parallel
Strand 5	D	157	162	parallel
Strand 6	D	204	211	anti-parallel
Strand 7	D	177	183	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	5	first strand
Strand 2	E	57	60	anti-parallel
Strand 3	E	67	77	anti-parallel
Strand 4	E	120	129	anti-parallel
Strand 5	E	157	162	parallel
Strand 6	E	204	211	anti-parallel
Strand 7	E	177	183	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	5	first strand
Strand 2	G	57	60	anti-parallel
Strand 3	G	67	77	anti-parallel
Strand 4	G	120	129	anti-parallel
Strand 5	G	157	162	parallel
Strand 6	G	204	211	anti-parallel
Strand 7	G	177	183	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V3T

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V3T