Analysis of interatomic Contacts of Structural Units in PDB entry:
6V3U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V3U entry

There are 4 chains in PDB entry 6V3U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 35GLY 199
A
 MSE 201LEU 261
B
 ILE 35GLY 199
B
 MSE 201LEU 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6V3U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
86 100Right-handed alpha
Helix 2
AA2
A
119 127Right-handed alpha
Helix 3
AA3
A
162 170Right-handed alpha
Helix 4
AA4
A
191 193Right-handed 310
Helix 5
AA5
A
209 215Right-handed alpha
Helix 6
AA6
A
217 232Right-handed alpha
Helix 7
AA7
A
248 261Right-handed alpha
Helix 8
AA8
B
86 100Right-handed alpha
Helix 9
AA9
B
119 127Right-handed alpha
Helix 10
AB1
B
162 170Right-handed alpha
Helix 11
AB2
B
191 193Right-handed 310
Helix 12
AB3
B
209 216Right-handed alpha
Helix 13
AB4
B
217 232Right-handed alpha
Helix 14
AB5
B
248 261Right-handed alpha
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There are 4 sheets in PDB entry 6V3U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 38first strand
Strand 2
A
41 47anti-parallel
Strand 3
A
50 59anti-parallel
Strand 4
A
63 74anti-parallel
Strand 5
A
77 81anti-parallel
Strand 6
A
105 109parallel
Strand 7
A
130 133parallel
Strand 8
A
151 152parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 175first strand
Strand 2
A
187 190anti-parallel
Strand 3
A
195 198anti-parallel
Strand 4
A
237 240parallel
Strand 5
A
243 246anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 38first strand
Strand 2
B
41 47anti-parallel
Strand 3
B
50 59anti-parallel
Strand 4
B
63 74anti-parallel
Strand 5
B
77 81anti-parallel
Strand 6
B
105 109parallel
Strand 7
B
130 133parallel
Strand 8
B
151 152parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 175first strand
Strand 2
B
187 190anti-parallel
Strand 3
B
195 198anti-parallel
Strand 4
B
237 240parallel
Strand 5
B
243 246anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il