Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 6V3V entry
There are 9 chains in PDB entry 6V3V
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
A
|
ARG 141 | ILE 187 |
B
|
LEU 451 | ASP 455 |
B
|
SER 457 | ILE 484 |
C
|
ARG 141 | ARG 189 |
D
|
LEU 451 | ASP 455 |
D
|
SER 457 | ILE 484 |
E
|
ARG 141 | SER 186 |
F
|
VAL 449 | ASP 455 |
F
|
SER 457 | ILE 484 |
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There are 8
helices in PDB entry 6V3V. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
| Helix 1 |
AA1 | A
| 142 |
182 | Right-handed alpha |
| Helix 2 |
AA2 | A
| 182 |
187 | Right-handed alpha |
| Helix 3 |
AA3 | B
| 456 |
484 | Right-handed alpha |
| Helix 4 |
AA4 | C
| 142 |
182 | Right-handed alpha |
| Helix 5 |
AA5 | C
| 183 |
189 | Right-handed alpha |
| Helix 6 |
AA6 | D
| 456 |
484 | Right-handed alpha |
| Helix 7 |
AA7 | E
| 142 |
182 | Right-handed alpha |
| Helix 8 |
AA8 | F
| 456 |
484 | Right-handed alpha |
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There are no sheets in PDB entry
6V3V
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il