Analysis of interatomic Contacts of Structural Units in PDB entry:
6V42

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V42 entry

There are 2 chains in PDB entry 6V42 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	ALA 466
B	GLY 1	ALA 466

There are 39 helices in PDB entry 6V42. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	11	Right-handed alpha
Helix 2	AA2	A	20	27	Right-handed alpha
Helix 3	AA3	A	31	34	Right-handed 310
Helix 4	AA4	A	35	42	Right-handed alpha
Helix 5	AA5	A	55	69	Right-handed alpha
Helix 6	AA6	A	118	131	Right-handed alpha
Helix 7	AA7	A	145	153	Right-handed alpha
Helix 8	AA8	A	158	163	Right-handed alpha
Helix 9	AA9	A	191	196	Right-handed 310
Helix 10	AB1	A	228	241	Right-handed alpha
Helix 11	AB2	A	256	262	Right-handed alpha
Helix 12	AB3	A	265	269	Right-handed 310
Helix 13	AB4	A	282	295	Right-handed alpha
Helix 14	AB5	A	303	307	Right-handed alpha
Helix 15	AB6	A	314	319	Right-handed 310
Helix 16	AB7	A	320	331	Right-handed alpha
Helix 17	AB8	A	345	357	Right-handed alpha
Helix 18	AB9	A	386	400	Right-handed alpha
Helix 19	AC1	A	421	432	Right-handed alpha
Helix 20	AC2	A	442	447	Right-handed alpha
Helix 21	AC3	B	4	11	Right-handed alpha
Helix 22	AC4	B	20	27	Right-handed alpha
Helix 23	AC5	B	31	34	Right-handed 310
Helix 24	AC6	B	35	42	Right-handed alpha
Helix 25	AC7	B	55	70	Right-handed alpha
Helix 26	AC8	B	118	131	Right-handed alpha
Helix 27	AC9	B	145	153	Right-handed alpha
Helix 28	AD1	B	158	163	Right-handed alpha
Helix 29	AD2	B	191	196	Right-handed 310
Helix 30	AD3	B	228	241	Right-handed alpha
Helix 31	AD4	B	256	262	Right-handed alpha
Helix 32	AD5	B	265	269	Right-handed 310
Helix 33	AD6	B	282	295	Right-handed alpha
Helix 34	AD7	B	314	319	Right-handed 310
Helix 35	AD8	B	320	331	Right-handed alpha
Helix 36	AD9	B	345	357	Right-handed alpha
Helix 37	AE1	B	386	400	Right-handed alpha
Helix 38	AE2	B	421	432	Right-handed alpha
Helix 39	AE3	B	442	447	Right-handed alpha

There are 10 sheets in PDB entry 6V42. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	18	first strand
Strand 2	A	49	52	anti-parallel
Strand 3	A	93	96	parallel
Strand 4	A	73	76	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	107	first strand
Strand 2	A	110	113	anti-parallel
Strand 3	A	205	215	anti-parallel
Strand 4	A	132	134	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	107	first strand
Strand 2	A	110	113	anti-parallel
Strand 3	A	205	215	anti-parallel
Strand 4	A	173	177	anti-parallel
Strand 5	A	185	188	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	302	first strand
Strand 2	A	219	226	anti-parallel
Strand 3	A	274	281	anti-parallel
Strand 4	A	247	253	anti-parallel
Strand 5	A	364	370	anti-parallel
Strand 6	A	373	378	anti-parallel
Strand 7	A	339	341	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	336	first strand
Strand 2	A	381	383	anti-parallel
Strand 3	A	361	362	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	18	first strand
Strand 2	B	49	52	anti-parallel
Strand 3	B	93	96	parallel
Strand 4	B	73	76	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	107	first strand
Strand 2	B	110	113	anti-parallel
Strand 3	B	205	215	anti-parallel
Strand 4	B	132	134	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	107	first strand
Strand 2	B	110	113	anti-parallel
Strand 3	B	205	215	anti-parallel
Strand 4	B	173	177	anti-parallel
Strand 5	B	185	188	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	302	first strand
Strand 2	B	219	226	anti-parallel
Strand 3	B	274	281	anti-parallel
Strand 4	B	247	253	anti-parallel
Strand 5	B	364	370	anti-parallel
Strand 6	B	373	378	anti-parallel
Strand 7	B	339	341	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	336	first strand
Strand 2	B	381	383	anti-parallel
Strand 3	B	361	362	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V42

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V42