Analysis of interatomic Contacts of Structural Units in PDB entry:
6V44

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V44 entry

There are 5 chains in PDB entry 6V44 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 3	PRO 322
B	GLY 1	ILE 173
C	TYR 3	PRO 322
D	GLY 1	ILE 173
E	TYR 3	ARG 283

There are 24 helices in PDB entry 6V44. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	61	68	Right-handed alpha
Helix 2	AA2	A	69	76	Right-handed 310
Helix 3	AA3	A	100	112	Right-handed alpha
Helix 4	AA4	A	184	193	Right-handed alpha
Helix 5	AA5	B	37	56	Right-handed alpha
Helix 6	AA6	B	75	127	Right-handed alpha
Helix 7	AA7	B	145	154	Right-handed alpha
Helix 8	AA8	B	158	172	Right-handed alpha
Helix 9	AA9	C	61	68	Right-handed alpha
Helix 10	AB1	C	69	76	Right-handed 310
Helix 11	AB2	C	100	112	Right-handed alpha
Helix 12	AB3	C	184	193	Right-handed alpha
Helix 13	AB4	D	37	56	Right-handed alpha
Helix 14	AB5	D	75	127	Right-handed alpha
Helix 15	AB6	D	145	154	Right-handed alpha
Helix 16	AB7	D	158	172	Right-handed alpha
Helix 17	AB8	E	61	68	Right-handed alpha
Helix 18	AB9	E	69	76	Right-handed 310
Helix 19	AC1	E	100	112	Right-handed alpha
Helix 20	AC2	E	184	193	Right-handed alpha
Helix 21	AC3	F	37	56	Right-handed alpha
Helix 22	AC4	F	75	127	Right-handed alpha
Helix 23	AC5	F	145	154	Right-handed alpha
Helix 24	AC6	F	158	172	Right-handed alpha

There are 30 sheets in PDB entry 6V44. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	36	first strand
Strand 2	B	22	28	anti-parallel
Strand 3	A	8	13	anti-parallel
Strand 4	B	137	140	anti-parallel
Strand 5	B	130	132	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	22	first strand
Strand 2	A	30	32	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	37	first strand
Strand 2	A	313	315	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	40	first strand
Strand 2	A	292	293	parallel
Strand 3	A	305	306	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	56	first strand
Strand 2	A	82	85	parallel
Strand 3	A	264	267	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	97	first strand
Strand 2	A	226	234	parallel
Strand 3	A	173	181	anti-parallel
Strand 4	A	253	256	anti-parallel
Strand 5	A	116	118	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	97	first strand
Strand 2	A	226	234	parallel
Strand 3	A	173	181	anti-parallel
Strand 4	A	248	251	anti-parallel
Strand 5	A	147	149	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	137	first strand
Strand 2	A	140	142	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	166	first strand
Strand 2	A	239	246	anti-parallel
Strand 3	A	198	202	anti-parallel
Strand 4	A	207	210	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	279	281	anti-parallel
Strand 3	A	299	302	anti-parallel
Strand 4	B	61	62	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	36	first strand
Strand 2	D	22	28	anti-parallel
Strand 3	C	8	13	anti-parallel
Strand 4	D	137	140	anti-parallel
Strand 5	D	130	132	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	22	first strand
Strand 2	C	30	32	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	37	first strand
Strand 2	C	313	315	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	292	293	parallel
Strand 3	C	305	306	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	56	first strand
Strand 2	C	82	85	parallel
Strand 3	C	264	267	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	226	234	parallel
Strand 3	C	173	181	anti-parallel
Strand 4	C	253	256	anti-parallel
Strand 5	C	116	118	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	226	234	parallel
Strand 3	C	173	181	anti-parallel
Strand 4	C	248	251	anti-parallel
Strand 5	C	147	149	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	137	first strand
Strand 2	C	140	142	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	166	first strand
Strand 2	C	239	246	anti-parallel
Strand 3	C	198	202	anti-parallel
Strand 4	C	207	210	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	285	first strand
Strand 2	C	279	281	anti-parallel
Strand 3	C	299	302	anti-parallel
Strand 4	D	61	62	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	36	first strand
Strand 2	F	22	28	anti-parallel
Strand 3	E	8	13	anti-parallel
Strand 4	F	137	140	anti-parallel
Strand 5	F	130	132	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	22	first strand
Strand 2	E	30	32	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	37	first strand
Strand 2	E	313	315	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	40	first strand
Strand 2	E	292	293	parallel
Strand 3	E	305	306	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	56	first strand
Strand 2	E	82	85	parallel
Strand 3	E	264	267	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	97	first strand
Strand 2	E	226	234	parallel
Strand 3	E	173	181	anti-parallel
Strand 4	E	253	256	anti-parallel
Strand 5	E	116	118	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	97	first strand
Strand 2	E	226	234	parallel
Strand 3	E	173	181	anti-parallel
Strand 4	E	248	251	anti-parallel
Strand 5	E	147	149	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	137	first strand
Strand 2	E	140	142	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	166	first strand
Strand 2	E	239	246	anti-parallel
Strand 3	E	198	202	anti-parallel
Strand 4	E	207	210	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	284	285	first strand
Strand 2	E	279	281	anti-parallel
Strand 3	E	299	302	anti-parallel
Strand 4	F	61	62	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V44

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V44