Analysis of interatomic Contacts of Structural Units in PDB entry:
6V49

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V49 entry

There are 5 chains in PDB entry 6V49 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 0	ILE 328
B	ALA 5	ILE 171
C	GLY 0	ILE 328
D	ALA 5	ILE 171
E	GLY 0	SER 291

There are 35 helices in PDB entry 6V49. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	62	Right-handed alpha
Helix 2	AA2	A	63	70	Right-handed 310
Helix 3	AA3	A	94	104	Right-handed alpha
Helix 4	AA4	A	126	130	Right-handed 310
Helix 5	AA5	A	178	186	Right-handed alpha
Helix 6	AA6	A	253	255	Right-handed 310
Helix 7	AA7	B	37	47	Right-handed alpha
Helix 8	AA8	B	49	56	Right-handed alpha
Helix 9	AA9	B	74	127	Right-handed alpha
Helix 10	AB1	B	145	154	Right-handed alpha
Helix 11	AB2	B	158	161	Right-handed 310
Helix 12	AB3	B	162	171	Right-handed alpha
Helix 13	AB4	C	57	62	Right-handed alpha
Helix 14	AB5	C	63	70	Right-handed 310
Helix 15	AB6	C	94	104	Right-handed alpha
Helix 16	AB7	C	126	130	Right-handed 310
Helix 17	AB8	C	178	186	Right-handed alpha
Helix 18	AB9	C	253	255	Right-handed 310
Helix 19	AC1	D	37	47	Right-handed alpha
Helix 20	AC2	D	49	55	Right-handed alpha
Helix 21	AC3	D	74	127	Right-handed alpha
Helix 22	AC4	D	145	154	Right-handed alpha
Helix 23	AC5	D	158	161	Right-handed 310
Helix 24	AC6	D	162	171	Right-handed alpha
Helix 25	AC7	E	57	62	Right-handed alpha
Helix 26	AC8	E	63	70	Right-handed 310
Helix 27	AC9	E	94	104	Right-handed alpha
Helix 28	AD1	E	178	186	Right-handed alpha
Helix 29	AD2	E	253	255	Right-handed 310
Helix 30	AD3	F	37	47	Right-handed alpha
Helix 31	AD4	F	49	56	Right-handed alpha
Helix 32	AD5	F	74	127	Right-handed alpha
Helix 33	AD6	F	145	154	Right-handed alpha
Helix 34	AD7	F	158	161	Right-handed 310
Helix 35	AD8	F	162	171	Right-handed alpha

There are 30 sheets in PDB entry 6V49. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	36	first strand
Strand 2	B	22	28	anti-parallel
Strand 3	A	2	7	anti-parallel
Strand 4	B	137	140	anti-parallel
Strand 5	B	130	132	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	16	first strand
Strand 2	A	24	26	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	30	first strand
Strand 2	A	317	318	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	295	296	parallel
Strand 3	A	308	309	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	42	first strand
Strand 2	A	273	275	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	50	first strand
Strand 2	A	76	79	parallel
Strand 3	A	266	269	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	220	228	parallel
Strand 3	A	167	175	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	140	142	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	112	first strand
Strand 2	A	247	251	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	160	first strand
Strand 2	A	233	238	anti-parallel
Strand 3	A	193	196	anti-parallel
Strand 4	A	203	204	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	288	first strand
Strand 2	A	282	284	anti-parallel
Strand 3	A	303	304	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	36	first strand
Strand 2	D	22	28	anti-parallel
Strand 3	C	1	7	anti-parallel
Strand 4	D	137	140	anti-parallel
Strand 5	D	130	132	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	16	first strand
Strand 2	C	24	26	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	30	first strand
Strand 2	C	317	318	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	34	first strand
Strand 2	C	295	296	parallel
Strand 3	C	308	309	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	42	first strand
Strand 2	C	274	275	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	50	first strand
Strand 2	C	76	79	parallel
Strand 3	C	266	269	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	92	first strand
Strand 2	C	220	228	parallel
Strand 3	C	167	175	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	140	142	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	112	first strand
Strand 2	C	247	251	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	160	first strand
Strand 2	C	233	238	anti-parallel
Strand 3	C	193	196	anti-parallel
Strand 4	C	203	204	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	287	288	first strand
Strand 2	C	282	284	anti-parallel
Strand 3	C	303	304	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	36	first strand
Strand 2	F	22	28	anti-parallel
Strand 3	E	2	7	anti-parallel
Strand 4	F	137	140	anti-parallel
Strand 5	F	130	132	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	16	first strand
Strand 2	E	24	26	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	30	first strand
Strand 2	E	317	318	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	34	first strand
Strand 2	E	295	296	parallel
Strand 3	E	308	309	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	42	first strand
Strand 2	E	274	275	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	50	first strand
Strand 2	E	76	79	parallel
Strand 3	E	266	269	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	92	first strand
Strand 2	E	220	228	parallel
Strand 3	E	167	175	anti-parallel
Strand 4	E	242	245	anti-parallel
Strand 5	E	140	142	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	112	first strand
Strand 2	E	247	251	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	155	160	first strand
Strand 2	E	233	238	anti-parallel
Strand 3	E	193	196	anti-parallel
Strand 4	E	203	204	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	287	288	first strand
Strand 2	E	282	284	anti-parallel
Strand 3	E	303	304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V49

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V49