Analysis of interatomic Contacts of Structural Units in PDB entry:
6V4A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V4A entry

There are 3 chains in PDB entry 6V4A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 36	PHE 636
E	GLY 36	PHE 636
D	GLY 36	THR 142

There are 50 helices in PDB entry 6V4A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	87	98	Right-handed alpha
Helix 2	AA2	A	102	118	Right-handed alpha
Helix 3	AA3	A	176	182	Right-handed 310
Helix 4	AA4	A	380	387	Right-handed alpha
Helix 5	AA5	A	388	390	Right-handed 310
Helix 6	AA6	A	515	522	Right-handed alpha
Helix 7	AA7	A	522	540	Right-handed alpha
Helix 8	AA8	A	541	563	Right-handed alpha
Helix 9	AA9	A	574	604	Right-handed alpha
Helix 10	AB1	A	605	636	Right-handed alpha
Helix 11	AB2	E	87	98	Right-handed alpha
Helix 12	AB3	E	102	118	Right-handed alpha
Helix 13	AB4	E	176	182	Right-handed 310
Helix 14	AB5	E	380	387	Right-handed alpha
Helix 15	AB6	E	388	390	Right-handed 310
Helix 16	AB7	E	515	522	Right-handed alpha
Helix 17	AB8	E	522	540	Right-handed alpha
Helix 18	AB9	E	541	563	Right-handed alpha
Helix 19	AC1	E	574	604	Right-handed alpha
Helix 20	AC2	E	605	635	Right-handed alpha
Helix 21	AC3	D	87	98	Right-handed alpha
Helix 22	AC4	D	102	118	Right-handed alpha
Helix 23	AC5	D	176	182	Right-handed 310
Helix 24	AC6	D	380	387	Right-handed alpha
Helix 25	AC7	D	388	390	Right-handed 310
Helix 26	AC8	D	515	522	Right-handed alpha
Helix 27	AC9	D	522	540	Right-handed alpha
Helix 28	AD1	D	541	563	Right-handed alpha
Helix 29	AD2	D	574	604	Right-handed alpha
Helix 30	AD3	D	605	635	Right-handed alpha
Helix 31	AD4	C	87	98	Right-handed alpha
Helix 32	AD5	C	102	118	Right-handed alpha
Helix 33	AD6	C	176	182	Right-handed 310
Helix 34	AD7	C	380	387	Right-handed alpha
Helix 35	AD8	C	388	390	Right-handed 310
Helix 36	AD9	C	515	522	Right-handed alpha
Helix 37	AE1	C	522	539	Right-handed alpha
Helix 38	AE2	C	541	563	Right-handed alpha
Helix 39	AE3	C	574	604	Right-handed alpha
Helix 40	AE4	C	605	635	Right-handed alpha
Helix 41	AE5	B	87	98	Right-handed alpha
Helix 42	AE6	B	102	118	Right-handed alpha
Helix 43	AE7	B	176	182	Right-handed 310
Helix 44	AE8	B	380	387	Right-handed alpha
Helix 45	AE9	B	388	390	Right-handed 310
Helix 46	AF1	B	515	522	Right-handed alpha
Helix 47	AF2	B	522	540	Right-handed alpha
Helix 48	AF3	B	541	563	Right-handed alpha
Helix 49	AF4	B	574	604	Right-handed alpha
Helix 50	AF5	B	605	635	Right-handed alpha

There are 35 sheets in PDB entry 6V4A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	45	first strand
Strand 2	A	166	174	anti-parallel
Strand 3	A	63	73	anti-parallel
Strand 4	A	133	136	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	122	first strand
Strand 2	A	77	82	anti-parallel
Strand 3	A	141	149	anti-parallel
Strand 4	A	51	58	anti-parallel
Strand 5	A	193	194	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	A	161	162	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	210	first strand
Strand 2	A	300	305	anti-parallel
Strand 3	A	231	237	anti-parallel
Strand 4	A	269	274	anti-parallel
Strand 5	A	256	262	anti-parallel
Strand 6	A	246	251	anti-parallel
Strand 7	A	282	287	anti-parallel
Strand 8	A	218	222	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	342	first strand
Strand 2	A	348	360	anti-parallel
Strand 3	A	420	432	anti-parallel
Strand 4	A	402	415	anti-parallel
Strand 5	A	376	379	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	399	first strand
Strand 2	A	451	454	anti-parallel
Strand 3	A	500	513	anti-parallel
Strand 4	A	445	448	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	399	first strand
Strand 2	A	451	454	anti-parallel
Strand 3	A	500	513	anti-parallel
Strand 4	A	482	496	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	45	first strand
Strand 2	E	166	174	anti-parallel
Strand 3	E	63	73	anti-parallel
Strand 4	E	133	136	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	122	first strand
Strand 2	E	77	82	anti-parallel
Strand 3	E	141	149	anti-parallel
Strand 4	E	51	58	anti-parallel
Strand 5	E	193	194	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	152	153	first strand
Strand 2	E	161	162	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	205	210	first strand
Strand 2	E	300	305	anti-parallel
Strand 3	E	231	237	anti-parallel
Strand 4	E	269	274	anti-parallel
Strand 5	E	256	262	anti-parallel
Strand 6	E	246	251	anti-parallel
Strand 7	E	282	287	anti-parallel
Strand 8	E	218	222	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	331	342	first strand
Strand 2	E	348	360	anti-parallel
Strand 3	E	420	432	anti-parallel
Strand 4	E	402	415	anti-parallel
Strand 5	E	376	379	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	397	399	first strand
Strand 2	E	451	454	anti-parallel
Strand 3	E	500	513	anti-parallel
Strand 4	E	445	448	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	397	399	first strand
Strand 2	E	451	454	anti-parallel
Strand 3	E	500	513	anti-parallel
Strand 4	E	482	496	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	45	first strand
Strand 2	D	166	174	anti-parallel
Strand 3	D	63	73	anti-parallel
Strand 4	D	133	136	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	122	first strand
Strand 2	D	77	82	anti-parallel
Strand 3	D	141	149	anti-parallel
Strand 4	D	51	58	anti-parallel
Strand 5	D	193	194	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	153	first strand
Strand 2	D	161	162	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	205	210	first strand
Strand 2	D	300	305	anti-parallel
Strand 3	D	231	237	anti-parallel
Strand 4	D	269	274	anti-parallel
Strand 5	D	256	262	anti-parallel
Strand 6	D	246	251	anti-parallel
Strand 7	D	282	287	anti-parallel
Strand 8	D	218	222	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	331	342	first strand
Strand 2	D	348	360	anti-parallel
Strand 3	D	420	432	anti-parallel
Strand 4	D	402	415	anti-parallel
Strand 5	D	376	379	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	397	399	first strand
Strand 2	D	451	454	anti-parallel
Strand 3	D	500	513	anti-parallel
Strand 4	D	445	448	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	397	399	first strand
Strand 2	D	451	454	anti-parallel
Strand 3	D	500	513	anti-parallel
Strand 4	D	482	496	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	45	first strand
Strand 2	C	166	174	anti-parallel
Strand 3	C	63	73	anti-parallel
Strand 4	C	133	136	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	122	first strand
Strand 2	C	77	82	anti-parallel
Strand 3	C	141	149	anti-parallel
Strand 4	C	51	58	anti-parallel
Strand 5	C	193	194	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	153	first strand
Strand 2	C	161	162	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	210	first strand
Strand 2	C	300	305	anti-parallel
Strand 3	C	231	237	anti-parallel
Strand 4	C	269	274	anti-parallel
Strand 5	C	256	262	anti-parallel
Strand 6	C	246	251	anti-parallel
Strand 7	C	282	287	anti-parallel
Strand 8	C	218	222	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	342	first strand
Strand 2	C	348	360	anti-parallel
Strand 3	C	420	432	anti-parallel
Strand 4	C	402	415	anti-parallel
Strand 5	C	376	379	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	397	399	first strand
Strand 2	C	451	454	anti-parallel
Strand 3	C	500	513	anti-parallel
Strand 4	C	445	448	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	397	399	first strand
Strand 2	C	451	454	anti-parallel
Strand 3	C	500	513	anti-parallel
Strand 4	C	482	496	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	45	first strand
Strand 2	B	166	174	anti-parallel
Strand 3	B	63	73	anti-parallel
Strand 4	B	133	136	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	122	first strand
Strand 2	B	77	82	anti-parallel
Strand 3	B	141	149	anti-parallel
Strand 4	B	51	58	anti-parallel
Strand 5	B	193	194	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	161	162	anti-parallel

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There are 8 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	210	first strand
Strand 2	B	300	305	anti-parallel
Strand 3	B	231	237	anti-parallel
Strand 4	B	269	274	anti-parallel
Strand 5	B	256	262	anti-parallel
Strand 6	B	246	251	anti-parallel
Strand 7	B	282	287	anti-parallel
Strand 8	B	218	222	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	342	first strand
Strand 2	B	348	360	anti-parallel
Strand 3	B	420	432	anti-parallel
Strand 4	B	402	415	anti-parallel
Strand 5	B	376	379	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	399	first strand
Strand 2	B	451	454	anti-parallel
Strand 3	B	500	513	anti-parallel
Strand 4	B	445	448	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	399	first strand
Strand 2	B	451	454	anti-parallel
Strand 3	B	500	513	anti-parallel
Strand 4	B	482	496	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V4A

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V4A