Analysis of interatomic Contacts of Structural Units in PDB entry:
6V4E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V4E entry

There are 8 chains in PDB entry 6V4E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 17LEU 106
B
 LEU 17LEU 106
C
 GLN 16PHE 19
C
 ASN 21LEU 26
C
 GLN 28ASN 29
D
 GLN 16PHE 19
D
 ASN 21LEU 26
D
 GLN 28ASN 29
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6V4E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 37Right-handed alpha
Helix 2
AA2
A
46 61Right-handed alpha
Helix 3
AA3
A
76 83Right-handed alpha
Helix 4
AA4
A
92 102Right-handed alpha
Helix 5
AA5
B
27 37Right-handed alpha
Helix 6
AA6
B
46 61Right-handed alpha
Helix 7
AA7
B
76 83Right-handed alpha
Helix 8
AA8
B
92 102Right-handed alpha
Helix 9
AA9
C
18 19Right-handed 310
Helix 10
AB1
C
21 21Right-handed 310
Helix 11
AB2
C
22 29Right-handed alpha
Helix 12
AB3
D
18 19Right-handed 310
Helix 13
AB4
D
21 21Right-handed 310
Helix 14
AB5
D
22 28Right-handed alpha
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There are 4 sheets in PDB entry 6V4E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
23 26anti-parallel
Strand 3
A
103 105anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
86 88anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
23 26anti-parallel
Strand 3
B
103 105anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 72first strand
Strand 2
B
86 88anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il