Analysis of interatomic Contacts of Structural Units in PDB entry:
6V4J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V4J entry

There are 5 chains in PDB entry 6V4J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	TRP 483
B	MET 1	TRP 483
C	MET 1	TRP 483
D	MET 1	TRP 483
E	MET 1	MET 1

There are139 helices in PDB entry 6V4J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	20	Right-handed alpha
Helix 2	AA2	A	21	22	Right-handed 310
Helix 3	AA3	A	23	27	Right-handed 310
Helix 4	AA4	A	38	48	Right-handed alpha
Helix 5	AA5	A	69	76	Right-handed alpha
Helix 6	AA6	A	77	79	Right-handed 310
Helix 7	AA7	A	85	89	Right-handed 310
Helix 8	AA8	A	97	109	Right-handed alpha
Helix 9	AA9	A	124	149	Right-handed alpha
Helix 10	AB1	A	180	202	Right-handed alpha
Helix 11	AB2	A	206	217	Right-handed alpha
Helix 12	AB3	A	235	252	Right-handed alpha
Helix 13	AB4	A	254	261	Right-handed 310
Helix 14	AB5	A	265	271	Right-handed 310
Helix 15	AB6	A	273	298	Right-handed alpha
Helix 16	AB7	A	302	319	Right-handed alpha
Helix 17	AB8	A	333	345	Right-handed alpha
Helix 18	AB9	A	357	377	Right-handed alpha
Helix 19	AC1	A	392	420	Right-handed alpha
Helix 20	AC2	A	424	435	Right-handed alpha
Helix 21	AC3	A	442	446	Right-handed 310
Helix 22	AC4	A	453	469	Right-handed alpha
Helix 23	AC5	A	471	479	Right-handed alpha
Helix 24	AC6	B	2	20	Right-handed alpha
Helix 25	AC7	B	21	22	Right-handed 310
Helix 26	AC8	B	23	27	Right-handed 310
Helix 27	AC9	B	37	55	Right-handed alpha
Helix 28	AD1	B	69	77	Right-handed alpha
Helix 29	AD2	B	78	82	Right-handed 310
Helix 30	AD3	B	85	89	Right-handed 310
Helix 31	AD4	B	97	110	Right-handed alpha
Helix 32	AD5	B	124	149	Right-handed alpha
Helix 33	AD6	B	180	203	Right-handed alpha
Helix 34	AD7	B	206	217	Right-handed alpha
Helix 35	AD8	B	235	251	Right-handed alpha
Helix 36	AD9	B	254	261	Right-handed 310
Helix 37	AE1	B	276	298	Right-handed alpha
Helix 38	AE2	B	302	319	Right-handed alpha
Helix 39	AE3	B	333	345	Right-handed alpha
Helix 40	AE4	B	357	377	Right-handed alpha
Helix 41	AE5	B	392	420	Right-handed alpha
Helix 42	AE6	B	424	437	Right-handed alpha
Helix 43	AE7	B	453	469	Right-handed alpha
Helix 44	AE8	B	471	479	Right-handed alpha
Helix 45	AE9	C	2	20	Right-handed alpha
Helix 46	AF1	C	23	27	Right-handed 310
Helix 47	AF2	C	38	53	Right-handed alpha
Helix 48	AF3	C	69	80	Right-handed alpha
Helix 49	AF4	C	85	89	Right-handed 310
Helix 50	AF5	C	97	111	Right-handed alpha
Helix 51	AF6	C	125	145	Right-handed alpha
Helix 52	AF7	C	180	203	Right-handed alpha
Helix 53	AF8	C	206	217	Right-handed alpha
Helix 54	AF9	C	235	251	Right-handed alpha
Helix 55	AG1	C	254	258	Right-handed 310
Helix 56	AG2	C	265	267	Right-handed 310
Helix 57	AG3	C	268	273	Right-handed alpha
Helix 58	AG4	C	273	298	Right-handed alpha
Helix 59	AG5	C	302	319	Right-handed alpha
Helix 60	AG6	C	333	345	Right-handed alpha
Helix 61	AG7	C	357	375	Right-handed alpha
Helix 62	AG8	C	392	420	Right-handed alpha
Helix 63	AG9	C	424	437	Right-handed alpha
Helix 64	AH1	C	453	469	Right-handed alpha
Helix 65	AH2	C	470	473	Right-handed 310
Helix 66	AH3	C	474	479	Right-handed alpha
Helix 67	AH4	D	2	20	Right-handed alpha
Helix 68	AH5	D	23	27	Right-handed 310
Helix 69	AH6	D	37	55	Right-handed alpha
Helix 70	AH7	D	69	82	Right-handed alpha
Helix 71	AH8	D	85	89	Right-handed 310
Helix 72	AH9	D	97	109	Right-handed alpha
Helix 73	AI1	D	110	112	Right-handed 310
Helix 74	AI2	D	124	143	Right-handed alpha
Helix 75	AI3	D	180	202	Right-handed alpha
Helix 76	AI4	D	206	217	Right-handed alpha
Helix 77	AI5	D	235	251	Right-handed alpha
Helix 78	AI6	D	254	261	Right-handed 310
Helix 79	AI7	D	265	271	Right-handed 310
Helix 80	AI8	D	273	298	Right-handed alpha
Helix 81	AI9	D	302	319	Right-handed alpha
Helix 82	AJ1	D	333	345	Right-handed alpha
Helix 83	AJ2	D	357	377	Right-handed alpha
Helix 84	AJ3	D	392	420	Right-handed alpha
Helix 85	AJ4	D	423	437	Right-handed alpha
Helix 86	AJ5	D	453	469	Right-handed alpha
Helix 87	AJ6	D	471	479	Right-handed alpha
Helix 88	AJ7	E	9	20	Right-handed alpha
Helix 89	AJ8	E	54	61	Right-handed alpha
Helix 90	AJ9	E	75	91	Right-handed alpha
Helix 91	AK1	E	101	106	Right-handed alpha
Helix 92	AK2	E	107	112	Right-handed alpha
Helix 93	AK3	E	241	252	Right-handed alpha
Helix 94	AK4	E	264	271	Right-handed alpha
Helix 95	AK5	E	286	291	Right-handed alpha
Helix 96	AK6	E	294	298	Right-handed 310
Helix 97	AK7	E	307	322	Right-handed alpha
Helix 98	AK8	E	332	334	Right-handed 310
Helix 99	AK9	E	335	340	Right-handed alpha
Helix 100	AL1	E	350	355	Right-handed alpha
Helix 101	AL2	E	355	360	Right-handed alpha
Helix 102	AL3	F	9	20	Right-handed alpha
Helix 103	AL4	F	54	61	Right-handed alpha
Helix 104	AL5	F	75	91	Right-handed alpha
Helix 105	AL6	F	101	106	Right-handed alpha
Helix 106	AL7	F	107	112	Right-handed alpha
Helix 107	AL8	F	243	252	Right-handed alpha
Helix 108	AL9	F	264	274	Right-handed alpha
Helix 109	AM1	F	286	291	Right-handed alpha
Helix 110	AM2	F	294	298	Right-handed 310
Helix 111	AM3	F	307	321	Right-handed alpha
Helix 112	AM4	F	335	340	Right-handed alpha
Helix 113	AM5	F	349	360	Right-handed alpha
Helix 114	AM6	G	9	20	Right-handed alpha
Helix 115	AM7	G	54	61	Right-handed alpha
Helix 116	AM8	G	75	91	Right-handed alpha
Helix 117	AM9	G	101	106	Right-handed alpha
Helix 118	AN1	G	107	112	Right-handed alpha
Helix 119	AN2	G	241	252	Right-handed alpha
Helix 120	AN3	G	264	274	Right-handed alpha
Helix 121	AN4	G	286	291	Right-handed alpha
Helix 122	AN5	G	294	298	Right-handed 310
Helix 123	AN6	G	309	321	Right-handed alpha
Helix 124	AN7	G	335	340	Right-handed alpha
Helix 125	AN8	G	350	355	Right-handed alpha
Helix 126	AN9	G	355	360	Right-handed alpha
Helix 127	AO1	H	9	20	Right-handed alpha
Helix 128	AO2	H	54	61	Right-handed alpha
Helix 129	AO3	H	75	91	Right-handed alpha
Helix 130	AO4	H	101	106	Right-handed alpha
Helix 131	AO5	H	107	112	Right-handed alpha
Helix 132	AO6	H	243	252	Right-handed alpha
Helix 133	AO7	H	264	274	Right-handed alpha
Helix 134	AO8	H	286	291	Right-handed alpha
Helix 135	AO9	H	294	298	Right-handed 310
Helix 136	AP1	H	309	321	Right-handed alpha
Helix 137	AP2	H	335	340	Right-handed alpha
Helix 138	AP3	H	350	355	Right-handed alpha
Helix 139	AP4	H	355	360	Right-handed alpha

There are 8 sheets in PDB entry 6V4J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	49	first strand
Strand 2	E	25	30	parallel
Strand 3	E	2	6	parallel
Strand 4	E	68	71	parallel
Strand 5	E	95	97	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	278	281	first strand
Strand 2	E	257	261	parallel
Strand 3	E	235	238	parallel
Strand 4	E	301	303	parallel
Strand 5	E	326	329	parallel
Strand 6	E	347	348	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	49	first strand
Strand 2	F	25	30	parallel
Strand 3	F	2	6	parallel
Strand 4	F	68	71	parallel
Strand 5	F	95	97	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	278	281	first strand
Strand 2	F	257	261	parallel
Strand 3	F	235	238	parallel
Strand 4	F	301	303	parallel
Strand 5	F	326	329	parallel
Strand 6	F	346	348	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	48	49	first strand
Strand 2	G	25	30	parallel
Strand 3	G	2	6	parallel
Strand 4	G	68	71	parallel
Strand 5	G	95	97	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	278	281	first strand
Strand 2	G	257	261	parallel
Strand 3	G	235	238	parallel
Strand 4	G	301	303	parallel
Strand 5	G	326	329	parallel
Strand 6	G	347	348	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	48	49	first strand
Strand 2	H	25	30	parallel
Strand 3	H	2	6	parallel
Strand 4	H	68	71	parallel
Strand 5	H	95	97	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	278	281	first strand
Strand 2	H	257	261	parallel
Strand 3	H	235	238	parallel
Strand 4	H	301	303	parallel
Strand 5	H	326	329	parallel
Strand 6	H	347	348	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V4J

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V4J