Analysis of interatomic Contacts of Structural Units in PDB entry:
6V4K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V4K entry

There are 3 chains in PDB entry 6V4K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 2	TRP 483
B	GLN 2	TRP 483
C	GLN 2	TRP 400

There are156 helices in PDB entry 6V4K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	32	Right-handed alpha
Helix 2	AA2	A	36	55	Right-handed alpha
Helix 3	AA3	A	67	91	Right-handed alpha
Helix 4	AA4	A	97	110	Right-handed alpha
Helix 5	AA5	A	126	149	Right-handed alpha
Helix 6	AA6	A	177	203	Right-handed alpha
Helix 7	AA7	A	206	219	Right-handed alpha
Helix 8	AA8	A	235	251	Right-handed alpha
Helix 9	AA9	A	252	261	Right-handed alpha
Helix 10	AB1	A	269	272	Right-handed 310
Helix 11	AB2	A	273	297	Right-handed alpha
Helix 12	AB3	A	302	319	Right-handed alpha
Helix 13	AB4	A	333	343	Right-handed alpha
Helix 14	AB5	A	357	377	Right-handed alpha
Helix 15	AB6	A	392	420	Right-handed alpha
Helix 16	AB7	A	423	435	Right-handed alpha
Helix 17	AB8	A	453	469	Right-handed alpha
Helix 18	AB9	A	472	479	Right-handed alpha
Helix 19	AC1	A	480	483	Right-handed 310
Helix 20	AC2	B	6	20	Right-handed alpha
Helix 21	AC3	B	21	32	Right-handed alpha
Helix 22	AC4	B	36	53	Right-handed alpha
Helix 23	AC5	B	67	85	Right-handed alpha
Helix 24	AC6	B	85	91	Right-handed alpha
Helix 25	AC7	B	97	110	Right-handed alpha
Helix 26	AC8	B	124	149	Right-handed alpha
Helix 27	AC9	B	179	203	Right-handed alpha
Helix 28	AD1	B	206	219	Right-handed alpha
Helix 29	AD2	B	235	251	Right-handed alpha
Helix 30	AD3	B	252	261	Right-handed alpha
Helix 31	AD4	B	269	272	Right-handed 310
Helix 32	AD5	B	273	297	Right-handed alpha
Helix 33	AD6	B	302	319	Right-handed alpha
Helix 34	AD7	B	333	343	Right-handed alpha
Helix 35	AD8	B	357	376	Right-handed alpha
Helix 36	AD9	B	392	420	Right-handed alpha
Helix 37	AE1	B	423	435	Right-handed alpha
Helix 38	AE2	B	453	469	Right-handed alpha
Helix 39	AE3	B	472	479	Right-handed alpha
Helix 40	AE4	C	6	21	Right-handed alpha
Helix 41	AE5	C	21	32	Right-handed alpha
Helix 42	AE6	C	36	53	Right-handed alpha
Helix 43	AE7	C	67	85	Right-handed alpha
Helix 44	AE8	C	85	91	Right-handed alpha
Helix 45	AE9	C	97	110	Right-handed alpha
Helix 46	AF1	C	126	149	Right-handed alpha
Helix 47	AF2	C	177	203	Right-handed alpha
Helix 48	AF3	C	206	219	Right-handed alpha
Helix 49	AF4	C	228	232	Right-handed 310
Helix 50	AF5	C	235	251	Right-handed alpha
Helix 51	AF6	C	252	261	Right-handed alpha
Helix 52	AF7	C	273	297	Right-handed alpha
Helix 53	AF8	C	302	319	Right-handed alpha
Helix 54	AF9	C	333	343	Right-handed alpha
Helix 55	AG1	C	357	374	Right-handed alpha
Helix 56	AG2	C	392	420	Right-handed alpha
Helix 57	AG3	C	423	435	Right-handed alpha
Helix 58	AG4	C	453	468	Right-handed alpha
Helix 59	AG5	C	469	471	Right-handed 310
Helix 60	AG6	C	472	479	Right-handed alpha
Helix 61	AG7	D	6	21	Right-handed alpha
Helix 62	AG8	D	21	31	Right-handed alpha
Helix 63	AG9	D	35	53	Right-handed alpha
Helix 64	AH1	D	67	85	Right-handed alpha
Helix 65	AH2	D	85	91	Right-handed alpha
Helix 66	AH3	D	97	110	Right-handed alpha
Helix 67	AH4	D	126	149	Right-handed alpha
Helix 68	AH5	D	177	203	Right-handed alpha
Helix 69	AH6	D	206	218	Right-handed alpha
Helix 70	AH7	D	235	251	Right-handed alpha
Helix 71	AH8	D	252	261	Right-handed alpha
Helix 72	AH9	D	273	297	Right-handed alpha
Helix 73	AI1	D	302	319	Right-handed alpha
Helix 74	AI2	D	333	345	Right-handed alpha
Helix 75	AI3	D	357	377	Right-handed alpha
Helix 76	AI4	D	392	420	Right-handed alpha
Helix 77	AI5	D	423	435	Right-handed alpha
Helix 78	AI6	D	453	470	Right-handed alpha
Helix 79	AI7	D	472	479	Right-handed alpha
Helix 80	AI8	E	11	20	Right-handed alpha
Helix 81	AI9	E	32	41	Right-handed alpha
Helix 82	AJ1	E	54	64	Right-handed alpha
Helix 83	AJ2	E	75	90	Right-handed alpha
Helix 84	AJ3	E	102	107	Right-handed alpha
Helix 85	AJ4	E	107	112	Right-handed alpha
Helix 86	AJ5	E	126	139	Right-handed alpha
Helix 87	AJ6	E	170	177	Right-handed alpha
Helix 88	AJ7	E	215	229	Right-handed alpha
Helix 89	AJ8	E	241	252	Right-handed alpha
Helix 90	AJ9	E	263	274	Right-handed alpha
Helix 91	AK1	E	286	291	Right-handed alpha
Helix 92	AK2	E	292	298	Right-handed 310
Helix 93	AK3	E	307	322	Right-handed alpha
Helix 94	AK4	E	332	340	Right-handed alpha
Helix 95	AK5	E	349	361	Right-handed alpha
Helix 96	AK6	E	398	402	Right-handed 310
Helix 97	AK7	E	440	442	Right-handed 310
Helix 98	AK8	E	443	452	Right-handed alpha
Helix 99	AK9	F	11	19	Right-handed alpha
Helix 100	AL1	F	34	43	Right-handed alpha
Helix 101	AL2	F	54	62	Right-handed alpha
Helix 102	AL3	F	75	89	Right-handed alpha
Helix 103	AL4	F	101	107	Right-handed alpha
Helix 104	AL5	F	131	139	Right-handed alpha
Helix 105	AL6	F	170	177	Right-handed alpha
Helix 106	AL7	F	215	229	Right-handed alpha
Helix 107	AL8	F	241	252	Right-handed alpha
Helix 108	AL9	F	263	274	Right-handed alpha
Helix 109	AM1	F	286	291	Right-handed alpha
Helix 110	AM2	F	292	298	Right-handed 310
Helix 111	AM3	F	307	322	Right-handed alpha
Helix 112	AM4	F	332	341	Right-handed alpha
Helix 113	AM5	F	349	363	Right-handed alpha
Helix 114	AM6	F	398	402	Right-handed 310
Helix 115	AM7	F	440	442	Right-handed 310
Helix 116	AM8	F	443	452	Right-handed alpha
Helix 117	AM9	G	11	16	Right-handed alpha
Helix 118	AN1	G	32	42	Right-handed alpha
Helix 119	AN2	G	54	63	Right-handed alpha
Helix 120	AN3	G	75	90	Right-handed alpha
Helix 121	AN4	G	102	107	Right-handed alpha
Helix 122	AN5	G	125	131	Right-handed alpha
Helix 123	AN6	G	131	139	Right-handed alpha
Helix 124	AN7	G	170	177	Right-handed alpha
Helix 125	AN8	G	215	229	Right-handed alpha
Helix 126	AN9	G	241	253	Right-handed alpha
Helix 127	AO1	G	263	274	Right-handed alpha
Helix 128	AO2	G	286	291	Right-handed alpha
Helix 129	AO3	G	292	298	Right-handed 310
Helix 130	AO4	G	307	322	Right-handed alpha
Helix 131	AO5	G	332	340	Right-handed alpha
Helix 132	AO6	G	349	362	Right-handed alpha
Helix 133	AO7	G	398	402	Right-handed 310
Helix 134	AO8	G	440	442	Right-handed 310
Helix 135	AO9	G	443	452	Right-handed alpha
Helix 136	AP1	H	11	19	Right-handed alpha
Helix 137	AP2	H	20	22	Right-handed 310
Helix 138	AP3	H	32	43	Right-handed alpha
Helix 139	AP4	H	54	59	Right-handed alpha
Helix 140	AP5	H	60	62	Right-handed 310
Helix 141	AP6	H	75	90	Right-handed alpha
Helix 142	AP7	H	102	112	Right-handed alpha
Helix 143	AP8	H	125	128	Right-handed 310
Helix 144	AP9	H	129	138	Right-handed alpha
Helix 145	AQ1	H	170	178	Right-handed alpha
Helix 146	AQ2	H	215	229	Right-handed alpha
Helix 147	AQ3	H	241	253	Right-handed alpha
Helix 148	AQ4	H	263	274	Right-handed alpha
Helix 149	AQ5	H	286	291	Right-handed alpha
Helix 150	AQ6	H	292	298	Right-handed 310
Helix 151	AQ7	H	307	322	Right-handed alpha
Helix 152	AQ8	H	332	337	Right-handed alpha
Helix 153	AQ9	H	349	362	Right-handed alpha
Helix 154	AR1	H	398	402	Right-handed 310
Helix 155	AR2	H	440	442	Right-handed 310
Helix 156	AR3	H	443	452	Right-handed alpha

There are 21 sheets in PDB entry 6V4K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	386	first strand
Strand 2	A	389	390	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	386	first strand
Strand 2	B	389	390	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	385	386	first strand
Strand 2	C	389	390	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	385	386	first strand
Strand 2	D	389	390	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	47	first strand
Strand 2	E	26	28	parallel
Strand 3	E	3	5	parallel
Strand 4	E	69	71	parallel
Strand 5	E	96	97	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	142	148	first strand
Strand 2	E	153	159	anti-parallel
Strand 3	E	208	214	anti-parallel
Strand 4	E	183	190	anti-parallel
Strand 5	E	193	195	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	277	279	first strand
Strand 2	E	256	259	parallel
Strand 3	E	234	237	parallel
Strand 4	E	300	303	parallel
Strand 5	E	325	328	parallel
Strand 6	E	346	347	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	371	372	first strand
Strand 2	E	380	385	anti-parallel
Strand 3	E	432	437	anti-parallel
Strand 4	E	409	415	anti-parallel
Strand 5	E	418	421	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	47	48	first strand
Strand 2	F	26	29	parallel
Strand 3	F	3	7	parallel
Strand 4	F	69	72	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	148	first strand
Strand 2	F	153	159	anti-parallel
Strand 3	F	208	214	anti-parallel
Strand 4	F	183	190	anti-parallel
Strand 5	F	193	195	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	278	279	first strand
Strand 2	F	256	259	parallel
Strand 3	F	234	237	parallel
Strand 4	F	300	303	parallel
Strand 5	F	325	328	parallel
Strand 6	F	346	347	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	370	372	first strand
Strand 2	F	380	384	anti-parallel
Strand 3	F	433	437	anti-parallel
Strand 4	F	409	415	anti-parallel
Strand 5	F	418	421	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	26	29	first strand
Strand 2	G	3	6	parallel
Strand 3	G	68	72	parallel
Strand 4	G	95	98	parallel
Strand 5	G	122	124	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	142	148	first strand
Strand 2	G	153	159	anti-parallel
Strand 3	G	208	214	anti-parallel
Strand 4	G	184	190	anti-parallel
Strand 5	G	193	195	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	277	279	first strand
Strand 2	G	256	259	parallel
Strand 3	G	234	237	parallel
Strand 4	G	300	303	parallel
Strand 5	G	325	328	parallel
Strand 6	G	346	347	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	371	372	first strand
Strand 2	G	380	384	anti-parallel
Strand 3	G	433	435	anti-parallel
Strand 4	G	412	415	anti-parallel
Strand 5	G	418	421	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	5	first strand
Strand 2	H	68	70	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	96	97	first strand
Strand 2	H	122	123	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	142	148	first strand
Strand 2	H	153	160	anti-parallel
Strand 3	H	207	214	anti-parallel
Strand 4	H	183	190	anti-parallel
Strand 5	H	193	195	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	277	279	first strand
Strand 2	H	256	259	parallel
Strand 3	H	234	237	parallel
Strand 4	H	300	303	parallel
Strand 5	H	325	328	parallel
Strand 6	H	346	347	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	371	372	first strand
Strand 2	H	380	383	anti-parallel
Strand 3	H	434	435	anti-parallel
Strand 4	H	412	415	anti-parallel
Strand 5	H	418	420	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V4K

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V4K