Analysis of interatomic Contacts of Structural Units in PDB entry:
6V4L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V4L entry

There are 4 chains in PDB entry 6V4L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 2	TRP 483
B	GLN 2	TRP 483
C	ILE 4	PHE 456
D	ILE 4	PHE 456

There are 84 helices in PDB entry 6V4L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	31	Right-handed alpha
Helix 2	AA2	A	36	55	Right-handed alpha
Helix 3	AA3	A	67	91	Right-handed alpha
Helix 4	AA4	A	97	110	Right-handed alpha
Helix 5	AA5	A	126	148	Right-handed alpha
Helix 6	AA6	A	148	154	Right-handed alpha
Helix 7	AA7	A	178	204	Right-handed alpha
Helix 8	AA8	A	206	213	Right-handed alpha
Helix 9	AA9	A	213	219	Right-handed alpha
Helix 10	AB1	A	235	251	Right-handed alpha
Helix 11	AB2	A	255	259	Right-handed 310
Helix 12	AB3	A	265	272	Right-handed alpha
Helix 13	AB4	A	273	296	Right-handed alpha
Helix 14	AB5	A	302	318	Right-handed alpha
Helix 15	AB6	A	333	343	Right-handed alpha
Helix 16	AB7	A	357	374	Right-handed alpha
Helix 17	AB8	A	392	413	Right-handed alpha
Helix 18	AB9	A	413	418	Right-handed alpha
Helix 19	AC1	A	423	436	Right-handed alpha
Helix 20	AC2	A	453	469	Right-handed alpha
Helix 21	AC3	A	470	476	Right-handed alpha
Helix 22	AC4	A	477	479	Right-handed 310
Helix 23	AC5	B	3	31	Right-handed alpha
Helix 24	AC6	B	36	55	Right-handed alpha
Helix 25	AC7	B	67	91	Right-handed alpha
Helix 26	AC8	B	97	110	Right-handed alpha
Helix 27	AC9	B	126	148	Right-handed alpha
Helix 28	AD1	B	148	154	Right-handed alpha
Helix 29	AD2	B	180	204	Right-handed alpha
Helix 30	AD3	B	206	213	Right-handed alpha
Helix 31	AD4	B	213	219	Right-handed alpha
Helix 32	AD5	B	235	251	Right-handed alpha
Helix 33	AD6	B	255	259	Right-handed 310
Helix 34	AD7	B	265	272	Right-handed alpha
Helix 35	AD8	B	273	296	Right-handed alpha
Helix 36	AD9	B	302	318	Right-handed alpha
Helix 37	AE1	B	333	343	Right-handed alpha
Helix 38	AE2	B	358	374	Right-handed alpha
Helix 39	AE3	B	392	413	Right-handed alpha
Helix 40	AE4	B	413	418	Right-handed alpha
Helix 41	AE5	B	423	435	Right-handed alpha
Helix 42	AE6	B	453	469	Right-handed alpha
Helix 43	AE7	B	470	476	Right-handed alpha
Helix 44	AE8	B	477	479	Right-handed 310
Helix 45	AE9	C	9	19	Right-handed alpha
Helix 46	AF1	C	32	40	Right-handed alpha
Helix 47	AF2	C	54	62	Right-handed alpha
Helix 48	AF3	C	81	89	Right-handed alpha
Helix 49	AF4	C	101	107	Right-handed alpha
Helix 50	AF5	C	107	113	Right-handed alpha
Helix 51	AF6	C	124	139	Right-handed alpha
Helix 52	AF7	C	170	175	Right-handed alpha
Helix 53	AF8	C	218	225	Right-handed alpha
Helix 54	AF9	C	241	252	Right-handed alpha
Helix 55	AG1	C	263	274	Right-handed alpha
Helix 56	AG2	C	286	293	Right-handed alpha
Helix 57	AG3	C	307	316	Right-handed alpha
Helix 58	AG4	C	316	321	Right-handed alpha
Helix 59	AG5	C	332	334	Right-handed 310
Helix 60	AG6	C	335	340	Right-handed alpha
Helix 61	AG7	C	353	362	Right-handed alpha
Helix 62	AG8	C	398	402	Right-handed 310
Helix 63	AG9	C	440	442	Right-handed 310
Helix 64	AH1	C	443	451	Right-handed alpha
Helix 65	AH2	D	9	19	Right-handed alpha
Helix 66	AH3	D	32	40	Right-handed alpha
Helix 67	AH4	D	54	63	Right-handed alpha
Helix 68	AH5	D	75	89	Right-handed alpha
Helix 69	AH6	D	102	107	Right-handed alpha
Helix 70	AH7	D	107	113	Right-handed alpha
Helix 71	AH8	D	124	139	Right-handed alpha
Helix 72	AH9	D	170	175	Right-handed alpha
Helix 73	AI1	D	218	225	Right-handed alpha
Helix 74	AI2	D	241	252	Right-handed alpha
Helix 75	AI3	D	263	274	Right-handed alpha
Helix 76	AI4	D	286	293	Right-handed alpha
Helix 77	AI5	D	294	298	Right-handed 310
Helix 78	AI6	D	307	322	Right-handed alpha
Helix 79	AI7	D	332	334	Right-handed 310
Helix 80	AI8	D	335	340	Right-handed alpha
Helix 81	AI9	D	353	362	Right-handed alpha
Helix 82	AJ1	D	398	402	Right-handed 310
Helix 83	AJ2	D	440	442	Right-handed 310
Helix 84	AJ3	D	443	451	Right-handed alpha

There are 13 sheets in PDB entry 6V4L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	346	first strand
Strand 2	B	356	357	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	28	first strand
Strand 2	C	46	47	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	71	first strand
Strand 2	C	96	98	parallel
Strand 3	C	121	123	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	147	first strand
Strand 2	C	153	160	anti-parallel
Strand 3	C	207	214	anti-parallel
Strand 4	C	185	190	anti-parallel
Strand 5	C	193	195	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	236	first strand
Strand 2	C	300	301	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	329	first strand
Strand 2	C	346	348	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	368	375	first strand
Strand 2	C	378	385	anti-parallel
Strand 3	C	432	438	anti-parallel
Strand 4	C	409	415	anti-parallel
Strand 5	C	418	421	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	29	first strand
Strand 2	D	46	48	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	71	first strand
Strand 2	D	96	98	parallel
Strand 3	D	121	123	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	147	first strand
Strand 2	D	153	160	anti-parallel
Strand 3	D	207	214	anti-parallel
Strand 4	D	185	190	anti-parallel
Strand 5	D	193	195	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	236	first strand
Strand 2	D	300	301	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	329	first strand
Strand 2	D	346	348	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	368	375	first strand
Strand 2	D	378	385	anti-parallel
Strand 3	D	432	438	anti-parallel
Strand 4	D	409	415	anti-parallel
Strand 5	D	418	421	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V4L

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V4L