Analysis of interatomic Contacts of Structural Units in PDB entry:
6V4S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V4S entry

There are 3 chains in PDB entry 6V4S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 35	HIS 639
E	GLU 35	HIS 639
D	GLU 35	PHE 146

There are 49 helices in PDB entry 6V4S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	88	98	Right-handed alpha
Helix 2	AA2	A	105	118	Right-handed alpha
Helix 3	AA3	A	176	182	Right-handed 310
Helix 4	AA4	A	362	365	Right-handed 310
Helix 5	AA5	A	382	391	Right-handed alpha
Helix 6	AA6	A	514	522	Right-handed alpha
Helix 7	AA7	A	522	537	Right-handed alpha
Helix 8	AA8	A	541	563	Right-handed alpha
Helix 9	AA9	A	574	603	Right-handed alpha
Helix 10	AB1	A	605	637	Right-handed alpha
Helix 11	AB2	E	88	98	Right-handed alpha
Helix 12	AB3	E	106	118	Right-handed alpha
Helix 13	AB4	E	176	182	Right-handed 310
Helix 14	AB5	E	382	391	Right-handed alpha
Helix 15	AB6	E	514	522	Right-handed alpha
Helix 16	AB7	E	522	537	Right-handed alpha
Helix 17	AB8	E	541	563	Right-handed alpha
Helix 18	AB9	E	574	603	Right-handed alpha
Helix 19	AC1	E	605	637	Right-handed alpha
Helix 20	AC2	D	88	98	Right-handed alpha
Helix 21	AC3	D	106	118	Right-handed alpha
Helix 22	AC4	D	176	182	Right-handed 310
Helix 23	AC5	D	362	365	Right-handed 310
Helix 24	AC6	D	382	391	Right-handed alpha
Helix 25	AC7	D	514	522	Right-handed alpha
Helix 26	AC8	D	522	537	Right-handed alpha
Helix 27	AC9	D	541	563	Right-handed alpha
Helix 28	AD1	D	574	603	Right-handed alpha
Helix 29	AD2	D	605	637	Right-handed alpha
Helix 30	AD3	C	88	98	Right-handed alpha
Helix 31	AD4	C	105	118	Right-handed alpha
Helix 32	AD5	C	176	182	Right-handed 310
Helix 33	AD6	C	362	365	Right-handed 310
Helix 34	AD7	C	382	391	Right-handed alpha
Helix 35	AD8	C	514	522	Right-handed alpha
Helix 36	AD9	C	522	537	Right-handed alpha
Helix 37	AE1	C	541	563	Right-handed alpha
Helix 38	AE2	C	574	603	Right-handed alpha
Helix 39	AE3	C	605	637	Right-handed alpha
Helix 40	AE4	B	88	98	Right-handed alpha
Helix 41	AE5	B	105	118	Right-handed alpha
Helix 42	AE6	B	176	182	Right-handed 310
Helix 43	AE7	B	362	365	Right-handed 310
Helix 44	AE8	B	382	391	Right-handed alpha
Helix 45	AE9	B	514	522	Right-handed alpha
Helix 46	AF1	B	522	537	Right-handed alpha
Helix 47	AF2	B	541	563	Right-handed alpha
Helix 48	AF3	B	574	603	Right-handed alpha
Helix 49	AF4	B	605	637	Right-handed alpha

There are 36 sheets in PDB entry 6V4S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	45	first strand
Strand 2	A	166	174	anti-parallel
Strand 3	A	63	73	anti-parallel
Strand 4	A	132	136	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	123	first strand
Strand 2	A	77	82	anti-parallel
Strand 3	A	141	149	anti-parallel
Strand 4	A	51	58	anti-parallel
Strand 5	A	193	194	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	152	first strand
Strand 2	A	162	163	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	206	first strand
Strand 2	A	298	306	anti-parallel
Strand 3	A	209	212	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	206	first strand
Strand 2	A	298	306	anti-parallel
Strand 3	A	231	238	anti-parallel
Strand 4	A	269	274	anti-parallel
Strand 5	A	261	262	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	222	first strand
Strand 2	A	282	287	anti-parallel
Strand 3	A	246	251	anti-parallel
Strand 4	A	256	259	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	379	first strand
Strand 2	A	407	415	anti-parallel
Strand 3	A	420	432	anti-parallel
Strand 4	A	348	360	anti-parallel
Strand 5	A	328	343	anti-parallel
Strand 6	A	461	466	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	399	first strand
Strand 2	A	445	454	anti-parallel
Strand 3	A	500	513	anti-parallel
Strand 4	A	482	496	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	45	first strand
Strand 2	E	166	174	anti-parallel
Strand 3	E	63	73	anti-parallel
Strand 4	E	132	136	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	123	first strand
Strand 2	E	77	82	anti-parallel
Strand 3	E	141	149	anti-parallel
Strand 4	E	51	58	anti-parallel
Strand 5	E	193	194	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	152	first strand
Strand 2	E	162	163	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	204	212	first strand
Strand 2	E	298	306	anti-parallel
Strand 3	E	231	238	anti-parallel
Strand 4	E	269	274	anti-parallel
Strand 5	E	261	262	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	218	222	first strand
Strand 2	E	282	287	anti-parallel
Strand 3	E	246	251	anti-parallel
Strand 4	E	256	259	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	376	379	first strand
Strand 2	E	407	415	anti-parallel
Strand 3	E	420	432	anti-parallel
Strand 4	E	348	360	anti-parallel
Strand 5	E	328	343	anti-parallel
Strand 6	E	461	466	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	397	399	first strand
Strand 2	E	445	454	anti-parallel
Strand 3	E	500	513	anti-parallel
Strand 4	E	482	496	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	45	first strand
Strand 2	D	166	174	anti-parallel
Strand 3	D	63	73	anti-parallel
Strand 4	D	132	136	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	123	first strand
Strand 2	D	77	82	anti-parallel
Strand 3	D	141	149	anti-parallel
Strand 4	D	51	58	anti-parallel
Strand 5	D	193	194	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	152	first strand
Strand 2	D	162	163	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	213	first strand
Strand 2	D	297	306	anti-parallel
Strand 3	D	231	238	anti-parallel
Strand 4	D	269	274	anti-parallel
Strand 5	D	261	262	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	218	222	first strand
Strand 2	D	282	287	anti-parallel
Strand 3	D	246	251	anti-parallel
Strand 4	D	256	259	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	376	379	first strand
Strand 2	D	407	415	anti-parallel
Strand 3	D	420	432	anti-parallel
Strand 4	D	348	360	anti-parallel
Strand 5	D	328	343	anti-parallel
Strand 6	D	461	466	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	397	399	first strand
Strand 2	D	445	454	anti-parallel
Strand 3	D	500	513	anti-parallel
Strand 4	D	482	496	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	45	first strand
Strand 2	C	166	174	anti-parallel
Strand 3	C	63	73	anti-parallel
Strand 4	C	132	136	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	123	first strand
Strand 2	C	77	82	anti-parallel
Strand 3	C	141	149	anti-parallel
Strand 4	C	51	58	anti-parallel
Strand 5	C	193	194	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	152	first strand
Strand 2	C	162	163	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	212	first strand
Strand 2	C	298	306	anti-parallel
Strand 3	C	231	238	anti-parallel
Strand 4	C	269	274	anti-parallel
Strand 5	C	261	262	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	222	first strand
Strand 2	C	282	287	anti-parallel
Strand 3	C	246	251	anti-parallel
Strand 4	C	256	259	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	379	first strand
Strand 2	C	407	415	anti-parallel
Strand 3	C	420	432	anti-parallel
Strand 4	C	348	360	anti-parallel
Strand 5	C	328	343	anti-parallel
Strand 6	C	461	466	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	397	399	first strand
Strand 2	C	445	454	anti-parallel
Strand 3	C	500	513	anti-parallel
Strand 4	C	482	496	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	45	first strand
Strand 2	B	166	174	anti-parallel
Strand 3	B	63	73	anti-parallel
Strand 4	B	132	136	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	123	first strand
Strand 2	B	77	82	anti-parallel
Strand 3	B	141	149	anti-parallel
Strand 4	B	51	58	anti-parallel
Strand 5	B	193	194	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	152	first strand
Strand 2	B	162	163	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	212	first strand
Strand 2	B	298	306	anti-parallel
Strand 3	B	231	238	anti-parallel
Strand 4	B	269	274	anti-parallel
Strand 5	B	261	262	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	222	first strand
Strand 2	B	282	287	anti-parallel
Strand 3	B	246	251	anti-parallel
Strand 4	B	256	259	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	379	first strand
Strand 2	B	407	415	anti-parallel
Strand 3	B	420	432	anti-parallel
Strand 4	B	348	360	anti-parallel
Strand 5	B	328	343	anti-parallel
Strand 6	B	461	466	parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	399	first strand
Strand 2	B	445	454	anti-parallel
Strand 3	B	500	513	anti-parallel
Strand 4	B	482	496	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V4S

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V4S