Analysis of interatomic Contacts of Structural Units in PDB entry:
6V4U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V4U entry

There are 3 chains in PDB entry 6V4U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 THR 34ASN 452
A
 SER 23PHE 481
B
 SER 54ILE 937
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6V4U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
444 451Right-handed alpha
Helix 2
AA2
A
55 69Right-handed alpha
Helix 3
AA3
A
117 119Right-handed 310
Helix 4
AA4
A
120 125Right-handed alpha
Helix 5
AA5
A
127 141Right-handed alpha
Helix 6
AA6
A
154 171Right-handed alpha
Helix 7
AA7
A
197 209Right-handed alpha
Helix 8
AA8
A
211 224Right-handed alpha
Helix 9
AA9
A
241 249Right-handed alpha
Helix 10
AB1
A
292 300Right-handed alpha
Helix 11
AB2
A
377 388Right-handed alpha
Helix 12
AB3
A
394 421Right-handed alpha
Helix 13
AB4
A
424 439Right-handed alpha
Helix 14
AB5
A
445 459Right-handed alpha
Helix 15
AB6
A
465 474Right-handed alpha
Helix 16
AB7
B
83 98Right-handed alpha
Helix 17
AB8
B
166 217Right-handed alpha
Helix 18
AB9
B
226 253Right-handed alpha
Helix 19
AC1
B
321 340Right-handed alpha
Helix 20
AC2
B
343 359Right-handed alpha
Helix 21
AC3
B
366 382Right-handed alpha
Helix 22
AC4
B
707 716Right-handed alpha
Helix 23
AC5
B
719 730Right-handed alpha
Helix 24
AC6
B
740 746Right-handed alpha
Helix 25
AC7
B
747 752Right-handed 310
Helix 26
AC8
B
771 779Right-handed alpha
Helix 27
AC9
B
825 832Right-handed alpha
Helix 28
AD1
B
842 868Right-handed alpha
Helix 29
AD2
B
880 892Right-handed alpha
Helix 30
AD3
B
900 914Right-handed alpha
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There are 10 sheets in PDB entry 6V4U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 39first strand
Strand 2
C
428 430anti-parallel
Strand 3
C
420 421anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 50first strand
Strand 2
C
58 61anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 67first strand
Strand 2
C
79 80anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 109first strand
Strand 2
C
115 119anti-parallel
Strand 3
C
127 129anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
140 141first strand
Strand 2
C
148 149anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
180 181first strand
Strand 2
C
188 189anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
329 332first strand
Strand 2
C
336 339anti-parallel
Strand 3
C
348 349anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 43first strand
Strand 2
A
27 33anti-parallel
Strand 3
A
109 115anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
A
92 94anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
784 786first strand
Strand 2
B
732 737parallel
Strand 3
B
807 810parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il