Analysis of interatomic Contacts of Structural Units in PDB entry:
6V4W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V4W entry

There are 2 chains in PDB entry 6V4W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 22ASN 295
B
 ASN 26ASN 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6V4W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 38Right-handed alpha
Helix 2
AA2
A
67 69Right-handed 310
Helix 3
AA3
A
70 84Right-handed alpha
Helix 4
AA4
A
96 100Right-handed 310
Helix 5
AA5
A
106 112Right-handed alpha
Helix 6
AA6
A
120 131Right-handed alpha
Helix 7
AA7
A
132 144Right-handed alpha
Helix 8
AA8
A
145 156Right-handed alpha
Helix 9
AA9
A
166 173Right-handed alpha
Helix 10
AB1
A
174 179Right-handed 310
Helix 11
AB2
A
183 196Right-handed alpha
Helix 12
AB3
A
201 214Right-handed alpha
Helix 13
AB4
A
275 294Right-handed alpha
Helix 14
AB5
B
27 38Right-handed alpha
Helix 15
AB6
B
67 69Right-handed 310
Helix 16
AB7
B
70 84Right-handed alpha
Helix 17
AB8
B
96 100Right-handed 310
Helix 18
AB9
B
106 112Right-handed alpha
Helix 19
AC1
B
120 130Right-handed alpha
Helix 20
AC2
B
132 144Right-handed alpha
Helix 21
AC3
B
145 156Right-handed alpha
Helix 22
AC4
B
166 173Right-handed alpha
Helix 23
AC5
B
174 179Right-handed 310
Helix 24
AC6
B
183 196Right-handed alpha
Helix 25
AC7
B
201 214Right-handed alpha
Helix 26
AC8
B
275 295Right-handed alpha
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There are 8 sheets in PDB entry 6V4W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
42 49anti-parallel
Strand 3
A
262 272anti-parallel
Strand 4
A
245 256anti-parallel
Strand 5
A
232 238anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
42 49anti-parallel
Strand 3
A
262 272anti-parallel
Strand 4
A
245 256anti-parallel
Strand 5
A
241 242anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
181 182anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 95first strand
Strand 2
A
116 119anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 58first strand
Strand 2
B
42 49anti-parallel
Strand 3
B
262 272anti-parallel
Strand 4
B
245 256anti-parallel
Strand 5
B
232 238anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 58first strand
Strand 2
B
42 49anti-parallel
Strand 3
B
262 272anti-parallel
Strand 4
B
245 256anti-parallel
Strand 5
B
241 242anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
181 182anti-parallel
Strand 3
B
161 162anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 95first strand
Strand 2
B
116 119anti-parallel
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