Analysis of interatomic Contacts of Structural Units in PDB entry:
6V4X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V4X entry

There are 12 chains in PDB entry 6V4X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	LYS 84
B	THR 2	PRO 87
F	LEU 3	GLU 76
E	VAL 10	VAL 90
G	ALA 4	HIS 80
C	MET 1	ARG 114
D	PRO 107	ALA 359
H	SER 9	LYS 512
I	THR 2	PRO 702
J	MET 30	PRO 340
Z	U 6	U 32
Y	C 25	A 49

There are 69 helices in PDB entry 6V4X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	12	Right-handed alpha
Helix 2	AA2	A	64	66	Right-handed 310
Helix 3	AA3	A	76	80	Right-handed 310
Helix 4	AA4	B	8	13	Right-handed 310
Helix 5	AA5	F	6	13	Right-handed alpha
Helix 6	AA6	E	16	28	Right-handed alpha
Helix 7	AA7	G	9	13	Right-handed 310
Helix 8	AA8	G	63	65	Right-handed 310
Helix 9	AA9	C	6	15	Right-handed alpha
Helix 10	AB1	C	17	22	Right-handed alpha
Helix 11	AB2	C	89	106	Right-handed alpha
Helix 12	AB3	D	108	114	Right-handed alpha
Helix 13	AB4	D	154	159	Right-handed alpha
Helix 14	AB5	D	160	166	Right-handed alpha
Helix 15	AB6	H	48	53	Right-handed 310
Helix 16	AB7	H	55	59	Right-handed 310
Helix 17	AB8	H	60	64	Right-handed 310
Helix 18	AB9	H	73	78	Right-handed alpha
Helix 19	AC1	H	79	85	Right-handed alpha
Helix 20	AC2	H	96	107	Right-handed alpha
Helix 21	AC3	H	109	114	Right-handed alpha
Helix 22	AC4	H	124	130	Right-handed alpha
Helix 23	AC5	H	214	232	Right-handed alpha
Helix 24	AC6	H	245	259	Right-handed alpha
Helix 25	AC7	H	260	265	Right-handed 310
Helix 26	AC8	H	273	278	Right-handed alpha
Helix 27	AC9	H	278	285	Right-handed alpha
Helix 28	AD1	H	290	295	Right-handed alpha
Helix 29	AD2	H	335	343	Right-handed alpha
Helix 30	AD3	H	362	367	Right-handed alpha
Helix 31	AD4	H	368	370	Right-handed 310
Helix 32	AD5	H	398	410	Right-handed alpha
Helix 33	AD6	H	420	433	Right-handed alpha
Helix 34	AD7	H	468	472	Right-handed 310
Helix 35	AD8	I	64	69	Right-handed alpha
Helix 36	AD9	I	70	77	Right-handed alpha
Helix 37	AE1	I	88	107	Right-handed alpha
Helix 38	AE2	I	115	123	Right-handed alpha
Helix 39	AE3	I	211	229	Right-handed alpha
Helix 40	AE4	I	242	256	Right-handed alpha
Helix 41	AE5	I	260	264	Right-handed 310
Helix 42	AE6	I	272	281	Right-handed alpha
Helix 43	AE7	I	288	297	Right-handed alpha
Helix 44	AE8	I	313	318	Right-handed alpha
Helix 45	AE9	I	336	345	Right-handed alpha
Helix 46	AF1	I	363	370	Right-handed alpha
Helix 47	AF2	I	548	556	Right-handed alpha
Helix 48	AF3	I	567	579	Right-handed alpha
Helix 49	AF4	J	31	44	Right-handed alpha
Helix 50	AF5	J	50	64	Right-handed alpha
Helix 51	AF6	J	66	70	Right-handed 310
Helix 52	AF7	J	73	78	Right-handed alpha
Helix 53	AF8	J	79	83	Right-handed 310
Helix 54	AF9	J	85	101	Right-handed alpha
Helix 55	AG1	J	103	105	Right-handed 310
Helix 56	AG2	J	106	111	Right-handed alpha
Helix 57	AG3	J	114	119	Right-handed alpha
Helix 58	AG4	J	122	147	Right-handed alpha
Helix 59	AG5	J	151	171	Right-handed alpha
Helix 60	AG6	J	172	174	Right-handed 310
Helix 61	AG7	J	176	192	Right-handed alpha
Helix 62	AG8	J	224	244	Right-handed alpha
Helix 63	AG9	J	249	266	Right-handed alpha
Helix 64	AH1	J	267	269	Right-handed 310
Helix 65	AH2	J	270	284	Right-handed alpha
Helix 66	AH3	J	290	310	Right-handed alpha
Helix 67	AH4	J	311	316	Right-handed 310
Helix 68	AH5	J	317	328	Right-handed alpha
Helix 69	AH6	J	331	337	Right-handed alpha

There are 22 sheets in PDB entry 6V4X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	57	first strand
Strand 2	A	41	49	anti-parallel
Strand 3	A	27	35	anti-parallel
Strand 4	A	16	22	anti-parallel
Strand 5	A	68	73	anti-parallel
Strand 6	B	69	72	anti-parallel
Strand 7	B	40	43	anti-parallel
Strand 8	B	26	33	anti-parallel
Strand 9	B	46	48	anti-parallel
Strand 10	B	64	66	anti-parallel

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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	63	first strand
Strand 2	A	41	49	anti-parallel
Strand 3	A	27	35	anti-parallel
Strand 4	A	16	22	anti-parallel
Strand 5	A	68	73	anti-parallel
Strand 6	B	69	72	anti-parallel
Strand 7	B	40	43	anti-parallel
Strand 8	B	26	33	anti-parallel
Strand 9	B	16	21	anti-parallel
Strand 10	B	77	84	anti-parallel
Strand 11	C	72	74	anti-parallel
Strand 12	C	52	54	anti-parallel
Strand 13	C	43	44	anti-parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	57	first strand
Strand 2	E	77	79	anti-parallel
Strand 3	F	69	73	anti-parallel
Strand 4	F	18	23	anti-parallel
Strand 5	F	27	36	anti-parallel
Strand 6	F	42	51	anti-parallel
Strand 7	F	54	64	anti-parallel
Strand 8	D	353	358	anti-parallel
Strand 9	D	168	174	anti-parallel
Strand 10	D	185	190	anti-parallel
Strand 11	D	196	198	anti-parallel

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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	57	first strand
Strand 2	E	77	79	anti-parallel
Strand 3	F	69	73	anti-parallel
Strand 4	F	18	23	anti-parallel
Strand 5	F	27	36	anti-parallel
Strand 6	F	42	51	anti-parallel
Strand 7	F	54	64	anti-parallel
Strand 8	D	353	358	anti-parallel
Strand 9	D	168	174	anti-parallel
Strand 10	D	179	182	anti-parallel
Strand 11	D	201	206	anti-parallel
Strand 12	D	338	343	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	75	first strand
Strand 2	E	61	65	anti-parallel
Strand 3	E	38	43	anti-parallel
Strand 4	E	31	35	anti-parallel
Strand 5	E	84	89	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	54	56	first strand
Strand 2	G	40	48	anti-parallel
Strand 3	G	60	62	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	54	56	first strand
Strand 2	G	40	48	anti-parallel
Strand 3	G	26	33	anti-parallel
Strand 4	G	16	21	anti-parallel
Strand 5	G	67	72	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	39	first strand
Strand 2	C	30	32	anti-parallel
Strand 3	C	81	83	anti-parallel
Strand 4	D	347	348	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	66	68	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	137	first strand
Strand 2	H	92	95	parallel
Strand 3	H	66	68	parallel
Strand 4	H	35	39	parallel
Strand 5	H	27	32	anti-parallel
Strand 6	H	11	18	anti-parallel
Strand 7	H	454	457	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	144	145	first strand
Strand 2	H	150	155	anti-parallel
Strand 3	H	163	169	anti-parallel
Strand 4	H	172	176	anti-parallel
Strand 5	H	200	204	parallel
Strand 6	H	413	417	parallel
Strand 7	H	444	446	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	308	310	first strand
Strand 2	H	268	271	parallel
Strand 3	H	323	327	parallel
Strand 4	H	235	237	parallel
Strand 5	H	351	354	parallel
Strand 6	H	387	390	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	373	375	first strand
Strand 2	H	381	383	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	462	466	first strand
Strand 2	I	606	610	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	492	495	first strand
Strand 2	H	481	487	anti-parallel
Strand 3	I	630	633	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	29	30	first strand
Strand 2	I	20	25	anti-parallel
Strand 3	I	5	11	anti-parallel
Strand 4	I	596	597	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	58	59	first strand
Strand 2	I	84	87	parallel
Strand 3	I	127	129	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	135	136	first strand
Strand 2	I	145	146	anti-parallel
Strand 3	I	162	163	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	149	150	first strand
Strand 2	I	158	159	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	172	173	first strand
Strand 2	I	198	200	parallel
Strand 3	I	561	563	parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	308	311	first strand
Strand 2	I	266	269	parallel
Strand 3	I	325	328	parallel
Strand 4	I	233	236	parallel
Strand 5	I	352	355	parallel
Strand 6	I	534	537	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	377	384	first strand
Strand 2	I	521	528	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V4X

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V4X