Analysis of interatomic Contacts of Structural Units in PDB entry:
6V55


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V55 entry

There are 2 chains in PDB entry 6V55 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 39LEU 827
Q
 THR 828MET 834
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6V55. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
91 95Right-handed 310
Helix 2
AA2
A
152 156Right-handed 310
Helix 3
AA3
A
236 240Right-handed 310
Helix 4
AA4
A
272 276Right-handed 310
Helix 5
AA5
A
317 323Right-handed alpha
Helix 6
AA6
A
336 338Right-handed 310
Helix 7
AA7
A
343 347Right-handed 310
Helix 8
AA8
A
419 434Right-handed alpha
Helix 9
AA9
A
478 487Right-handed alpha
Helix 10
AB1
A
575 587Right-handed alpha
Helix 11
AB2
A
592 610Right-handed alpha
Helix 12
AB3
A
613 628Right-handed alpha
Helix 13
AB4
A
631 653Right-handed alpha
Helix 14
AB5
A
721 726Right-handed alpha
Helix 15
AB6
A
796 801Right-handed alpha
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There are 11 sheets in PDB entry 6V55. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
66 72parallel
Strand 3
A
126 132anti-parallel
Strand 4
A
98 102anti-parallel
Strand 5
A
107 110anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 53first strand
Strand 2
A
141 150anti-parallel
Strand 3
A
77 87anti-parallel
Strand 4
A
119 121anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 159first strand
Strand 2
A
304 312anti-parallel
Strand 3
A
181 190anti-parallel
Strand 4
A
245 252anti-parallel
Strand 5
A
257 262anti-parallel
Strand 6
A
265 270anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
340 341anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 230first strand
Strand 2
A
219 224anti-parallel
Strand 3
A
209 216anti-parallel
Strand 4
A
197 203anti-parallel
Strand 5
A
284 287anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 451first strand
Strand 2
A
458 469anti-parallel
Strand 3
A
401 412anti-parallel
Strand 4
A
495 504anti-parallel
Strand 5
A
490 492anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 512first strand
Strand 2
A
518 519anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 531first strand
Strand 2
A
539 547anti-parallel
Strand 3
A
552 555anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
659 662first strand
Strand 2
A
667 673anti-parallel
Strand 3
A
730 736anti-parallel
Strand 4
A
756 760anti-parallel
Strand 5
Q
829 834anti-parallel
Strand 6
A
751 752anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
659 662first strand
Strand 2
A
667 673anti-parallel
Strand 3
A
730 736anti-parallel
Strand 4
A
756 760anti-parallel
Strand 5
Q
829 834anti-parallel
Strand 6
A
789 794anti-parallel
Strand 7
A
803 805anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
696 698first strand
Strand 2
A
682 687anti-parallel
Strand 3
A
708 712anti-parallel
Strand 4
A
773 778anti-parallel
Strand 5
A
819 824anti-parallel
Strand 6
A
809 811anti-parallel
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