Analysis of interatomic Contacts of Structural Units in PDB entry:
6V59


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V59 entry

There are 2 chains in PDB entry 6V59 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 125PRO 543
B
 PRO 125PRO 543
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 6V59. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
155 159Right-handed 310
Helix 2
AA2
A
164 177Right-handed alpha
Helix 3
AA3
A
178 181Right-handed 310
Helix 4
AA4
A
187 191Right-handed 310
Helix 5
AA5
A
193 197Right-handed 310
Helix 6
AA6
A
203 209Right-handed alpha
Helix 7
AA7
A
231 235Right-handed 310
Helix 8
AA8
A
263 268Right-handed alpha
Helix 9
AA9
A
268 274Right-handed alpha
Helix 10
AB1
A
282 292Right-handed alpha
Helix 11
AB2
A
293 304Right-handed alpha
Helix 12
AB3
A
305 309Right-handed 310
Helix 13
AB4
A
310 327Right-handed alpha
Helix 14
AB5
A
328 332Right-handed 310
Helix 15
AB6
A
336 345Right-handed alpha
Helix 16
AB7
A
349 360Right-handed alpha
Helix 17
AB8
A
366 370Right-handed 310
Helix 18
AB9
A
379 383Right-handed 310
Helix 19
AC1
A
401 406Right-handed 310
Helix 20
AC2
A
413 421Right-handed alpha
Helix 21
AC3
A
425 430Right-handed 310
Helix 22
AC4
A
440 444Right-handed 310
Helix 23
AC5
A
455 466Right-handed alpha
Helix 24
AC6
A
469 474Right-handed alpha
Helix 25
AC7
A
484 491Right-handed 310
Helix 26
AC8
A
509 522Right-handed alpha
Helix 27
AC9
A
523 524Right-handed 310
Helix 28
AD1
A
525 532Right-handed 310
Helix 29
AD2
B
155 159Right-handed 310
Helix 30
AD3
B
164 176Right-handed alpha
Helix 31
AD4
B
177 181Right-handed 310
Helix 32
AD5
B
187 191Right-handed 310
Helix 33
AD6
B
193 197Right-handed 310
Helix 34
AD7
B
203 209Right-handed alpha
Helix 35
AD8
B
231 235Right-handed 310
Helix 36
AD9
B
263 268Right-handed alpha
Helix 37
AE1
B
268 274Right-handed alpha
Helix 38
AE2
B
282 292Right-handed alpha
Helix 39
AE3
B
293 304Right-handed alpha
Helix 40
AE4
B
305 309Right-handed 310
Helix 41
AE5
B
310 327Right-handed alpha
Helix 42
AE6
B
328 332Right-handed 310
Helix 43
AE7
B
336 343Right-handed alpha
Helix 44
AE8
B
349 360Right-handed alpha
Helix 45
AE9
B
366 370Right-handed 310
Helix 46
AF1
B
379 383Right-handed 310
Helix 47
AF2
B
401 406Right-handed 310
Helix 48
AF3
B
413 421Right-handed alpha
Helix 49
AF4
B
425 430Right-handed 310
Helix 50
AF5
B
440 444Right-handed 310
Helix 51
AF6
B
455 466Right-handed alpha
Helix 52
AF7
B
469 474Right-handed alpha
Helix 53
AF8
B
484 491Right-handed 310
Helix 54
AF9
B
509 522Right-handed alpha
Helix 55
AG1
B
523 524Right-handed 310
Helix 56
AG2
B
525 532Right-handed 310
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There are 6 sheets in PDB entry 6V59. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
137 143anti-parallel
Strand 3
A
147 150anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 241first strand
Strand 2
A
250 252anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 391first strand
Strand 2
A
433 434anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 128first strand
Strand 2
B
137 143anti-parallel
Strand 3
B
147 150anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 241first strand
Strand 2
B
250 252anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
390 391first strand
Strand 2
B
433 434anti-parallel
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