Analysis of interatomic Contacts of Structural Units in PDB entry:
6V5A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V5A entry

There is 1 chain in PDB entry 6V5A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 343LEU 1060
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6V5A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
352 367Right-handed alpha
Helix 2
AA2
A
369 373Right-handed 310
Helix 3
AA3
A
387 395Right-handed alpha
Helix 4
AA4
A
407 414Right-handed alpha
Helix 5
AA5
A
415 419Right-handed 310
Helix 6
AA6
A
432 451Right-handed alpha
Helix 7
AA7
A
462 467Right-handed alpha
Helix 8
AA8
A
468 472Right-handed 310
Helix 9
AA9
A
476 480Right-handed 310
Helix 10
AB1
A
486 500Right-handed alpha
Helix 11
AB2
A
502 510Right-handed alpha
Helix 12
AB3
A
523 533Right-handed alpha
Helix 13
AB4
A
542 546Right-handed 310
Helix 14
AB5
A
549 562Right-handed alpha
Helix 15
AB6
A
601 606Right-handed alpha
Helix 16
AB7
A
606 611Right-handed alpha
Helix 17
AB8
A
699 703Right-handed 310
Helix 18
AB9
A
706 713Right-handed alpha
Helix 19
AC1
A
734 739Right-handed alpha
Helix 20
AC2
A
740 743Right-handed 310
Helix 21
AC3
A
747 751Right-handed 310
Helix 22
AC4
A
759 767Right-handed alpha
Helix 23
AC5
A
768 770Right-handed 310
Helix 24
AC6
A
785 792Right-handed alpha
Helix 25
AC7
A
793 797Right-handed 310
Helix 26
AC8
A
818 830Right-handed alpha
Helix 27
AC9
A
884 891Right-handed 310
Helix 28
AD1
A
902 905Right-handed 310
Helix 29
AD2
A
906 911Right-handed alpha
Helix 30
AD3
A
918 920Right-handed 310
Helix 31
AD4
A
921 930Right-handed alpha
Helix 32
AD5
A
931 943Right-handed alpha
Helix 33
AD6
A
951 957Right-handed alpha
Helix 34
AD7
A
965 971Right-handed alpha
Helix 35
AD8
A
987 992Right-handed alpha
Helix 36
AD9
A
995 1008Right-handed alpha
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There are 6 sheets in PDB entry 6V5A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 402first strand
Strand 2
A
374 379parallel
Strand 3
A
344 349parallel
Strand 4
A
421 425parallel
Strand 5
A
456 460parallel
Strand 6
A
482 485parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
535 540first strand
Strand 2
A
594 599anti-parallel
Strand 3
A
564 569anti-parallel
Strand 4
A
579 581anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
686 687first strand
Strand 2
A
961 962anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
776 780first strand
Strand 2
A
754 758parallel
Strand 3
A
719 724parallel
Strand 4
A
799 804parallel
Strand 5
A
878 882parallel
Strand 6
A
914 916parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
831 832first strand
Strand 2
A
871 872anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
976 981first strand
Strand 2
A
1048 1053anti-parallel
Strand 3
A
1010 1017anti-parallel
Strand 4
A
1031 1035anti-parallel
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