Analysis of interatomic Contacts of Structural Units in PDB entry:
6V5B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V5B entry

There are 4 chains in PDB entry 6V5B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 411ARG 1356
C
 SER 493ARG 750
B
 SER 493THR 749
D
 G 3 A 101
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 6V5B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
425 429Right-handed 310
Helix 2
AA2
A
442 449Right-handed alpha
Helix 3
AA3
A
503 512Right-handed alpha
Helix 4
AA4
A
642 655Right-handed alpha
Helix 5
AA5
A
698 709Right-handed alpha
Helix 6
AA6
A
719 723Right-handed 310
Helix 7
AA7
A
728 736Right-handed alpha
Helix 8
AA8
A
787 805Right-handed alpha
Helix 9
AA9
A
814 829Right-handed alpha
Helix 10
AB1
A
855 876Right-handed alpha
Helix 11
AB2
A
877 884Right-handed alpha
Helix 12
AB3
A
890 897Right-handed alpha
Helix 13
AB4
A
909 920Right-handed alpha
Helix 14
AB5
A
944 950Right-handed alpha
Helix 15
AB6
A
965 986Right-handed alpha
Helix 16
AB7
A
992 1004Right-handed alpha
Helix 17
AB8
A
1005 1015Right-handed alpha
Helix 18
AB9
A
1016 1021Right-handed 310
Helix 19
AC1
A
1033 1055Right-handed alpha
Helix 20
AC2
A
1056 1069Right-handed alpha
Helix 21
AC3
A
1071 1080Right-handed alpha
Helix 22
AC4
A
1084 1089Right-handed alpha
Helix 23
AC5
A
1104 1115Right-handed alpha
Helix 24
AC6
A
1120 1128Right-handed alpha
Helix 25
AC7
A
1145 1166Right-handed alpha
Helix 26
AC8
A
1170 1182Right-handed alpha
Helix 27
AC9
A
1185 1195Right-handed alpha
Helix 28
AD1
A
1196 1200Right-handed 310
Helix 29
AD2
A
1213 1232Right-handed alpha
Helix 30
AD3
A
1233 1245Right-handed alpha
Helix 31
AD4
A
1248 1256Right-handed alpha
Helix 32
AD5
A
1262 1270Right-handed alpha
Helix 33
AD6
A
1316 1332Right-handed alpha
Helix 34
AD7
A
1335 1348Right-handed alpha
Helix 35
AD8
A
1349 1356Right-handed alpha
Helix 36
AD9
C
511 521Right-handed alpha
Helix 37
AE1
C
560 577Right-handed alpha
Helix 38
AE2
C
607 615Right-handed alpha
Helix 39
AE3
C
619 629Right-handed alpha
Helix 40
AE4
C
668 685Right-handed alpha
Helix 41
AE5
C
691 699Right-handed alpha
Helix 42
AE6
C
729 750Right-handed alpha
Helix 43
AE7
B
511 523Right-handed alpha
Helix 44
AE8
B
560 575Right-handed alpha
Helix 45
AE9
B
596 600Right-handed 310
Helix 46
AF1
B
605 609Right-handed 310
Helix 47
AF2
B
619 629Right-handed alpha
Helix 48
AF3
B
668 685Right-handed alpha
Helix 49
AF4
B
692 699Right-handed alpha
Helix 50
AF5
B
728 745Right-handed alpha
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There are 7 sheets in PDB entry 6V5B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
591 594first strand
Strand 2
A
597 608anti-parallel
Strand 3
A
572 578anti-parallel
Strand 4
A
626 633anti-parallel
Strand 5
A
618 621anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
591 594first strand
Strand 2
A
597 608anti-parallel
Strand 3
A
679 686anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1284 1290first strand
Strand 2
A
1297 1304anti-parallel
Strand 3
A
1307 1314anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
532 534first strand
Strand 2
C
542 545anti-parallel
Strand 3
C
555 558anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
652 653first strand
Strand 2
C
664 665anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
529 534first strand
Strand 2
B
542 548anti-parallel
Strand 3
B
551 558anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
651 657first strand
Strand 2
B
660 666anti-parallel
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