Analysis of interatomic Contacts of Structural Units in PDB entry:
6V5C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V5C entry

There are 4 chains in PDB entry 6V5C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 411ARG 1349
C
 SER 493ARG 750
B
 SER 493THR 749
D
 C 9 G 95
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 6V5C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
442 447Right-handed 310
Helix 2
AA2
A
504 512Right-handed alpha
Helix 3
AA3
A
529 538Right-handed 310
Helix 4
AA4
A
642 654Right-handed alpha
Helix 5
AA5
A
698 708Right-handed alpha
Helix 6
AA6
A
726 737Right-handed alpha
Helix 7
AA7
A
777 781Right-handed 310
Helix 8
AA8
A
782 786Right-handed 310
Helix 9
AA9
A
787 804Right-handed alpha
Helix 10
AB1
A
812 830Right-handed alpha
Helix 11
AB2
A
862 875Right-handed alpha
Helix 12
AB3
A
876 882Right-handed 310
Helix 13
AB4
A
889 897Right-handed alpha
Helix 14
AB5
A
909 920Right-handed alpha
Helix 15
AB6
A
965 986Right-handed alpha
Helix 16
AB7
A
992 1004Right-handed alpha
Helix 17
AB8
A
1005 1017Right-handed alpha
Helix 18
AB9
A
1033 1055Right-handed alpha
Helix 19
AC1
A
1056 1063Right-handed alpha
Helix 20
AC2
A
1064 1069Right-handed alpha
Helix 21
AC3
A
1071 1080Right-handed alpha
Helix 22
AC4
A
1084 1089Right-handed alpha
Helix 23
AC5
A
1103 1115Right-handed alpha
Helix 24
AC6
A
1120 1127Right-handed alpha
Helix 25
AC7
A
1145 1165Right-handed alpha
Helix 26
AC8
A
1170 1182Right-handed alpha
Helix 27
AC9
A
1185 1195Right-handed alpha
Helix 28
AD1
A
1214 1226Right-handed alpha
Helix 29
AD2
A
1234 1245Right-handed alpha
Helix 30
AD3
A
1248 1255Right-handed alpha
Helix 31
AD4
A
1260 1269Right-handed alpha
Helix 32
AD5
A
1303 1307Right-handed 310
Helix 33
AD6
A
1317 1332Right-handed alpha
Helix 34
AD7
A
1340 1345Right-handed alpha
Helix 35
AD8
C
511 523Right-handed alpha
Helix 36
AD9
C
561 575Right-handed alpha
Helix 37
AE1
C
612 616Right-handed 310
Helix 38
AE2
C
618 631Right-handed alpha
Helix 39
AE3
C
668 685Right-handed alpha
Helix 40
AE4
C
693 698Right-handed alpha
Helix 41
AE5
C
729 750Right-handed alpha
Helix 42
AE6
B
511 523Right-handed alpha
Helix 43
AE7
B
560 576Right-handed alpha
Helix 44
AE8
B
597 601Right-handed 310
Helix 45
AE9
B
609 613Right-handed 310
Helix 46
AF1
B
619 627Right-handed alpha
Helix 47
AF2
B
668 685Right-handed alpha
Helix 48
AF3
B
692 698Right-handed alpha
Helix 49
AF4
B
730 748Right-handed alpha
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There are 9 sheets in PDB entry 6V5C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 415first strand
Strand 2
A
694 696parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
572 573first strand
Strand 2
A
598 608anti-parallel
Strand 3
A
591 593anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
572 573first strand
Strand 2
A
598 608anti-parallel
Strand 3
A
681 686anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
618 621first strand
Strand 2
A
626 629anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
740 741first strand
Strand 2
A
752 753anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1289 1290first strand
Strand 2
A
1297 1300anti-parallel
Strand 3
A
1312 1314anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
530 534first strand
Strand 2
C
542 547anti-parallel
Strand 3
C
552 554anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
639 641first strand
Strand 2
C
655 657anti-parallel
Strand 3
C
660 662anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
529 533first strand
Strand 2
B
542 548anti-parallel
Strand 3
B
551 558anti-parallel
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