Analysis of interatomic Contacts of Structural Units in PDB entry:
6V5M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V5M entry

There is 1 chain in PDB entry 6V5M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 39PRO 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6V5M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
90 104Right-handed alpha
Helix 2
AA2
A
118 123Right-handed alpha
Helix 3
AA3
A
124 131Right-handed alpha
Helix 4
AA4
A
139 148Right-handed alpha
Helix 5
AA5
A
199 201Right-handed 310
Helix 6
AA6
A
219 231Right-handed alpha
Helix 7
AA7
A
247 258Right-handed alpha
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There are 2 sheets in PDB entry 6V5M. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 51first strand
Strand 2
A
54 62anti-parallel
Strand 3
A
68 77anti-parallel
Strand 4
A
82 85anti-parallel
Strand 5
A
109 113parallel
Strand 6
A
134 138parallel
Strand 7
A
155 157parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 168first strand
Strand 2
A
171 174anti-parallel
Strand 3
A
186 189anti-parallel
Strand 4
A
194 198anti-parallel
Strand 5
A
236 239parallel
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