Analysis of interatomic Contacts of Structural Units in PDB entry:
6V5N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V5N entry

There are 4 chains in PDB entry 6V5N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLN 701	ASP 1008
A	GLN 701	ASP 1014
B	ASN 700	ASP 1008
C	GLN 701	MET 1007

There are 68 helices in PDB entry 6V5N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	708	710	Right-handed 310
Helix 2	AA2	D	756	769	Right-handed alpha
Helix 3	AA3	D	797	805	Right-handed alpha
Helix 4	AA4	D	810	831	Right-handed alpha
Helix 5	AA5	D	839	841	Right-handed 310
Helix 6	AA6	D	857	863	Right-handed alpha
Helix 7	AA7	D	865	870	Right-handed 310
Helix 8	AA8	D	877	881	Right-handed 310
Helix 9	AA9	D	882	889	Right-handed alpha
Helix 10	AB1	D	892	909	Right-handed alpha
Helix 11	AB2	D	919	921	Right-handed 310
Helix 12	AB3	D	922	929	Right-handed alpha
Helix 13	AB4	D	940	950	Right-handed alpha
Helix 14	AB5	D	954	958	Right-handed 310
Helix 15	AB6	D	960	973	Right-handed alpha
Helix 16	AB7	D	974	978	Right-handed 310
Helix 17	AB8	D	983	987	Right-handed 310
Helix 18	AB9	D	991	1003	Right-handed alpha
Helix 19	AC1	A	708	710	Right-handed 310
Helix 20	AC2	A	755	767	Right-handed alpha
Helix 21	AC3	A	797	805	Right-handed alpha
Helix 22	AC4	A	810	831	Right-handed alpha
Helix 23	AC5	A	839	841	Right-handed 310
Helix 24	AC6	A	857	863	Right-handed alpha
Helix 25	AC7	A	865	871	Right-handed 310
Helix 26	AC8	A	877	881	Right-handed 310
Helix 27	AC9	A	882	889	Right-handed alpha
Helix 28	AD1	A	892	909	Right-handed alpha
Helix 29	AD2	A	919	921	Right-handed 310
Helix 30	AD3	A	922	929	Right-handed alpha
Helix 31	AD4	A	940	950	Right-handed alpha
Helix 32	AD5	A	954	958	Right-handed 310
Helix 33	AD6	A	960	973	Right-handed alpha
Helix 34	AD7	A	974	978	Right-handed 310
Helix 35	AD8	A	983	987	Right-handed 310
Helix 36	AD9	A	991	1003	Right-handed alpha
Helix 37	AE1	B	700	704	Right-handed 310
Helix 38	AE2	B	708	710	Right-handed 310
Helix 39	AE3	B	755	768	Right-handed alpha
Helix 40	AE4	B	798	805	Right-handed alpha
Helix 41	AE5	B	810	831	Right-handed alpha
Helix 42	AE6	B	839	841	Right-handed 310
Helix 43	AE7	B	857	862	Right-handed alpha
Helix 44	AE8	B	877	881	Right-handed 310
Helix 45	AE9	B	882	889	Right-handed alpha
Helix 46	AF1	B	892	909	Right-handed alpha
Helix 47	AF2	B	919	921	Right-handed 310
Helix 48	AF3	B	922	930	Right-handed alpha
Helix 49	AF4	B	940	951	Right-handed alpha
Helix 50	AF5	B	960	973	Right-handed alpha
Helix 51	AF6	B	974	978	Right-handed 310
Helix 52	AF7	B	991	1003	Right-handed alpha
Helix 53	AF8	C	708	710	Right-handed 310
Helix 54	AF9	C	752	768	Right-handed alpha
Helix 55	AG1	C	797	805	Right-handed alpha
Helix 56	AG2	C	810	831	Right-handed alpha
Helix 57	AG3	C	839	841	Right-handed 310
Helix 58	AG4	C	877	881	Right-handed 310
Helix 59	AG5	C	882	889	Right-handed alpha
Helix 60	AG6	C	892	909	Right-handed alpha
Helix 61	AG7	C	919	921	Right-handed 310
Helix 62	AG8	C	922	929	Right-handed alpha
Helix 63	AG9	C	940	951	Right-handed alpha
Helix 64	AH1	C	954	958	Right-handed 310
Helix 65	AH2	C	960	973	Right-handed alpha
Helix 66	AH3	C	974	979	Right-handed alpha
Helix 67	AH4	C	983	987	Right-handed 310
Helix 68	AH5	C	991	1003	Right-handed alpha

There are 8 sheets in PDB entry 6V5N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	705	706	first strand
Strand 2	D	779	782	parallel
Strand 3	D	786	790	anti-parallel
Strand 4	D	740	747	anti-parallel
Strand 5	D	724	731	anti-parallel
Strand 6	D	712	720	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	843	847	first strand
Strand 2	D	850	853	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	705	706	first strand
Strand 2	A	779	782	parallel
Strand 3	A	786	790	anti-parallel
Strand 4	A	740	747	anti-parallel
Strand 5	A	724	731	anti-parallel
Strand 6	A	712	721	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	843	847	first strand
Strand 2	A	850	853	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	705	706	first strand
Strand 2	B	779	782	parallel
Strand 3	B	786	791	anti-parallel
Strand 4	B	740	747	anti-parallel
Strand 5	B	724	731	anti-parallel
Strand 6	B	712	720	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	796	797	first strand
Strand 2	B	843	847	anti-parallel
Strand 3	B	850	853	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	705	706	first strand
Strand 2	C	779	782	parallel
Strand 3	C	786	790	anti-parallel
Strand 4	C	740	747	anti-parallel
Strand 5	C	724	731	anti-parallel
Strand 6	C	712	719	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	843	847	first strand
Strand 2	C	850	853	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V5N

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V5N