Analysis of interatomic Contacts of Structural Units in PDB entry:
6V5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V5T entry

There are 10 chains in PDB entry 6V5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 GLU 1PRO 28
E
 GLN 30ARG 50
E
 VAL 52PRO 60
E
 ASP 60ASN 95
E
 ARG 97GLY 140
E
 GLY 142THR 147
E
 THR 149ARG 206
E
 TYR 208SER 214
E
 GLY 216LYS 236
E
 ILE 238GLU 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6V5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
7 11Right-handed 310
Helix 2
AA2
E
14 14Right-handed alpha
Helix 3
AA3
E
55 58Right-handed 310
Helix 4
AA4
E
60 60Right-handed 310
Helix 5
AA5
E
60 62Right-handed 310
Helix 6
AA6
E
125 130Right-handed alpha
Helix 7
AA7
E
142 149Right-handed alpha
Helix 8
AA8
E
164 171Right-handed alpha
Helix 9
AA9
E
189 193Right-handed 310
Helix 10
AB1
E
234 246Right-handed alpha
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There are 3 sheets in PDB entry 6V5T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
20 21first strand
Strand 2
E
156 161anti-parallel
Strand 3
E
135 140anti-parallel
Strand 4
E
198 202anti-parallel
Strand 5
E
207 213anti-parallel
Strand 6
E
226 230anti-parallel
Strand 7
E
180 183anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
30 35first strand
Strand 2
E
39 46anti-parallel
Strand 3
E
51 54anti-parallel
Strand 4
E
104 108anti-parallel
Strand 5
E
81 90anti-parallel
Strand 6
E
64 68anti-parallel
Strand 7
E
30 35anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
60 60first strand
Strand 2
E
60 60anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il