Analysis of interatomic Contacts of Structural Units in PDB entry:
6V5V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V5V entry

There is 1 chain in PDB entry 6V5V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
g	ARG 3	SER 445

There are 15 helices in PDB entry 6V5V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	g	10	29	Right-handed alpha
Helix 2	AA2	g	73	80	Right-handed alpha
Helix 3	AA3	g	82	86	Right-handed 310
Helix 4	AA4	g	103	114	Right-handed alpha
Helix 5	AA5	g	114	128	Right-handed alpha
Helix 6	AA6	g	145	161	Right-handed alpha
Helix 7	AA7	g	184	196	Right-handed alpha
Helix 8	AA8	g	206	218	Right-handed alpha
Helix 9	AA9	g	225	240	Right-handed alpha
Helix 10	AB1	g	240	245	Right-handed alpha
Helix 11	AB2	g	252	261	Right-handed alpha
Helix 12	AB3	g	289	298	Right-handed alpha
Helix 13	AB4	g	332	344	Right-handed alpha
Helix 14	AB5	g	384	400	Right-handed alpha
Helix 15	AB6	g	419	439	Right-handed alpha

There are 3 sheets in PDB entry 6V5V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	64	66	first strand
Strand 2	g	4	9	parallel
Strand 3	g	132	138	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	52	53	first strand
Strand 2	g	61	62	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	270	273	first strand
Strand 2	g	375	381	anti-parallel
Strand 3	g	317	324	anti-parallel
Strand 4	g	356	360	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V5V

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V5V