Analysis of interatomic Contacts of Structural Units in PDB entry:
6V6A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V6A entry

There are 4 chains in PDB entry 6V6A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4LYS 349
B
 THR 420MET 452
C
 VAL 5ILE 324
D
 THR 420MET 452
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 6V6A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 11Right-handed alpha
Helix 2
AA2
A
50 68Right-handed alpha
Helix 3
AA3
A
99 106Right-handed alpha
Helix 4
AA4
A
109 130Right-handed alpha
Helix 5
AA5
A
138 140Right-handed 310
Helix 6
AA6
A
183 187Right-handed 310
Helix 7
AA7
A
188 193Right-handed alpha
Helix 8
AA8
A
199 217Right-handed alpha
Helix 9
AA9
A
225 238Right-handed alpha
Helix 10
AB1
A
241 248Right-handed alpha
Helix 11
AB2
A
252 260Right-handed alpha
Helix 12
AB3
A
267 272Right-handed alpha
Helix 13
AB4
A
276 287Right-handed alpha
Helix 14
AB5
A
290 294Right-handed 310
Helix 15
AB6
A
296 301Right-handed alpha
Helix 16
AB7
A
302 307Right-handed 310
Helix 17
AB8
A
311 315Right-handed 310
Helix 18
AB9
A
335 349Right-handed alpha
Helix 19
AC1
B
429 434Right-handed 310
Helix 20
AC2
B
437 441Right-handed 310
Helix 21
AC3
C
6 11Right-handed alpha
Helix 22
AC4
C
50 68Right-handed alpha
Helix 23
AC5
C
99 105Right-handed alpha
Helix 24
AC6
C
109 130Right-handed alpha
Helix 25
AC7
C
138 140Right-handed 310
Helix 26
AC8
C
183 187Right-handed 310
Helix 27
AC9
C
188 193Right-handed alpha
Helix 28
AD1
C
200 217Right-handed alpha
Helix 29
AD2
C
225 238Right-handed alpha
Helix 30
AD3
C
241 247Right-handed alpha
Helix 31
AD4
C
252 259Right-handed alpha
Helix 32
AD5
C
267 272Right-handed alpha
Helix 33
AD6
C
276 287Right-handed alpha
Helix 34
AD7
C
290 294Right-handed 310
Helix 35
AD8
C
296 301Right-handed alpha
Helix 36
AD9
C
302 307Right-handed 310
Helix 37
AE1
C
311 315Right-handed 310
Helix 38
AE2
D
429 434Right-handed alpha
Helix 39
AE3
D
437 441Right-handed 310
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There are 6 sheets in PDB entry 6V6A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 21first strand
Strand 2
A
25 32anti-parallel
Strand 3
A
38 44anti-parallel
Strand 4
A
88 93anti-parallel
Strand 5
A
76 81anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
142 144anti-parallel
Strand 3
A
150 152anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
159 160anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 21first strand
Strand 2
C
25 31anti-parallel
Strand 3
C
38 44anti-parallel
Strand 4
C
88 93anti-parallel
Strand 5
C
76 81anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
97 98first strand
Strand 2
C
142 144anti-parallel
Strand 3
C
150 152anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
132 133first strand
Strand 2
C
159 160anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il