Analysis of interatomic Contacts of Structural Units in PDB entry:
6V6F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V6F entry

There are 3 chains in PDB entry 6V6F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 13SER 124
B
 PHE 1205PRO 1528
C
 MET 1GLU 168
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6V6F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
105 122Right-handed alpha
Helix 2
AA2
B
1205 1214Right-handed 310
Helix 3
AA3
B
1221 1231Right-handed alpha
Helix 4
AA4
B
1232 1234Right-handed 310
Helix 5
AA5
B
1235 1250Right-handed alpha
Helix 6
AA6
B
1252 1268Right-handed alpha
Helix 7
AA7
B
1270 1274Right-handed 310
Helix 8
AA8
B
1279 1310Right-handed alpha
Helix 9
AA9
B
1322 1326Right-handed 310
Helix 10
AB1
B
1331 1352Right-handed alpha
Helix 11
AB2
B
1358 1374Right-handed alpha
Helix 12
AB3
B
1380 1392Right-handed alpha
Helix 13
AB4
B
1392 1399Right-handed alpha
Helix 14
AB5
B
1411 1431Right-handed alpha
Helix 15
AB6
B
1437 1442Right-handed 310
Helix 16
AB7
B
1443 1449Right-handed alpha
Helix 17
AB8
B
1450 1462Right-handed alpha
Helix 18
AB9
B
1486 1492Right-handed alpha
Helix 19
AC1
B
1495 1500Right-handed alpha
Helix 20
AC2
B
1514 1525Right-handed alpha
Helix 21
AC3
C
15 25Right-handed alpha
Helix 22
AC4
C
61 66Right-handed 310
Helix 23
AC5
C
67 75Right-handed alpha
Helix 24
AC6
C
86 105Right-handed alpha
Helix 25
AC7
C
126 138Right-handed alpha
Helix 26
AC8
C
151 167Right-handed alpha
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There are 3 sheets in PDB entry 6V6F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
15 24anti-parallel
Strand 3
A
40 48anti-parallel
Strand 4
A
56 64anti-parallel
Strand 5
A
70 75anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
15 24anti-parallel
Strand 3
A
97 103anti-parallel
Strand 4
A
89 94anti-parallel
Strand 5
A
82 86anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 46first strand
Strand 2
C
49 57anti-parallel
Strand 3
C
3 10parallel
Strand 4
C
77 83parallel
Strand 5
C
111 116parallel
Strand 6
C
141 143parallel
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