Analysis of interatomic Contacts of Structural Units in PDB entry:
6V6H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V6H entry

There are 8 chains in PDB entry 6V6H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 142
A	ASP 146	HIS 392
A	THR 394	MET 534
B	MET 1	GLY 142
B	ASP 146	HIS 392
B	THR 394	MET 534
C	MET 1	GLY 142
C	ASP 146	ARG 361

There are103 helices in PDB entry 6V6H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	21	Right-handed alpha
Helix 2	AA2	A	29	49	Right-handed alpha
Helix 3	AA3	A	69	84	Right-handed alpha
Helix 4	AA4	A	93	109	Right-handed alpha
Helix 5	AA5	A	116	130	Right-handed alpha
Helix 6	AA6	A	146	158	Right-handed alpha
Helix 7	AA7	A	174	182	Right-handed alpha
Helix 8	AA8	A	191	198	Right-handed alpha
Helix 9	AA9	A	200	232	Right-handed alpha
Helix 10	AB1	A	236	239	Right-handed 310
Helix 11	AB2	A	240	246	Right-handed alpha
Helix 12	AB3	A	249	263	Right-handed alpha
Helix 13	AB4	A	285	290	Right-handed alpha
Helix 14	AB5	A	290	314	Right-handed alpha
Helix 15	AB6	A	338	368	Right-handed alpha
Helix 16	AB7	A	368	373	Right-handed alpha
Helix 17	AB8	A	375	379	Right-handed 310
Helix 18	AB9	A	388	406	Right-handed alpha
Helix 19	AC1	A	408	412	Right-handed 310
Helix 20	AC2	A	427	460	Right-handed alpha
Helix 21	AC3	A	465	477	Right-handed alpha
Helix 22	AC4	A	487	501	Right-handed alpha
Helix 23	AC5	A	502	509	Right-handed alpha
Helix 24	AC6	A	510	512	Right-handed 310
Helix 25	AC7	A	513	518	Right-handed 310
Helix 26	AC8	A	519	523	Right-handed 310
Helix 27	AC9	B	11	21	Right-handed alpha
Helix 28	AD1	B	29	49	Right-handed alpha
Helix 29	AD2	B	69	84	Right-handed alpha
Helix 30	AD3	B	93	109	Right-handed alpha
Helix 31	AD4	B	116	130	Right-handed alpha
Helix 32	AD5	B	146	158	Right-handed alpha
Helix 33	AD6	B	174	182	Right-handed alpha
Helix 34	AD7	B	191	198	Right-handed alpha
Helix 35	AD8	B	200	232	Right-handed alpha
Helix 36	AD9	B	236	239	Right-handed 310
Helix 37	AE1	B	240	246	Right-handed alpha
Helix 38	AE2	B	249	263	Right-handed alpha
Helix 39	AE3	B	285	290	Right-handed alpha
Helix 40	AE4	B	290	314	Right-handed alpha
Helix 41	AE5	B	338	368	Right-handed alpha
Helix 42	AE6	B	368	373	Right-handed alpha
Helix 43	AE7	B	375	379	Right-handed 310
Helix 44	AE8	B	388	406	Right-handed alpha
Helix 45	AE9	B	408	412	Right-handed 310
Helix 46	AF1	B	427	460	Right-handed alpha
Helix 47	AF2	B	465	477	Right-handed alpha
Helix 48	AF3	B	487	501	Right-handed alpha
Helix 49	AF4	B	502	509	Right-handed alpha
Helix 50	AF5	B	510	512	Right-handed 310
Helix 51	AF6	B	513	518	Right-handed 310
Helix 52	AF7	B	519	523	Right-handed 310
Helix 53	AF8	C	11	21	Right-handed alpha
Helix 54	AF9	C	29	49	Right-handed alpha
Helix 55	AG1	C	69	84	Right-handed alpha
Helix 56	AG2	C	93	109	Right-handed alpha
Helix 57	AG3	C	116	130	Right-handed alpha
Helix 58	AG4	C	146	158	Right-handed alpha
Helix 59	AG5	C	174	182	Right-handed alpha
Helix 60	AG6	C	191	198	Right-handed alpha
Helix 61	AG7	C	200	232	Right-handed alpha
Helix 62	AG8	C	236	239	Right-handed 310
Helix 63	AG9	C	240	246	Right-handed alpha
Helix 64	AH1	C	249	264	Right-handed alpha
Helix 65	AH2	C	285	290	Right-handed alpha
Helix 66	AH3	C	290	314	Right-handed alpha
Helix 67	AH4	C	338	368	Right-handed alpha
Helix 68	AH5	C	368	373	Right-handed alpha
Helix 69	AH6	C	375	379	Right-handed 310
Helix 70	AH7	C	388	406	Right-handed alpha
Helix 71	AH8	C	408	412	Right-handed 310
Helix 72	AH9	C	427	460	Right-handed alpha
Helix 73	AI1	C	465	477	Right-handed alpha
Helix 74	AI2	C	487	501	Right-handed alpha
Helix 75	AI3	C	502	509	Right-handed alpha
Helix 76	AI4	C	510	512	Right-handed 310
Helix 77	AI5	C	513	518	Right-handed 310
Helix 78	AI6	C	519	523	Right-handed 310
Helix 79	AI7	D	11	21	Right-handed alpha
Helix 80	AI8	D	29	49	Right-handed alpha
Helix 81	AI9	D	69	84	Right-handed alpha
Helix 82	AJ1	D	93	109	Right-handed alpha
Helix 83	AJ2	D	116	130	Right-handed alpha
Helix 84	AJ3	D	146	158	Right-handed alpha
Helix 85	AJ4	D	174	182	Right-handed alpha
Helix 86	AJ5	D	191	198	Right-handed alpha
Helix 87	AJ6	D	200	232	Right-handed alpha
Helix 88	AJ7	D	236	239	Right-handed 310
Helix 89	AJ8	D	240	246	Right-handed alpha
Helix 90	AJ9	D	249	264	Right-handed alpha
Helix 91	AK1	D	285	290	Right-handed alpha
Helix 92	AK2	D	290	314	Right-handed alpha
Helix 93	AK3	D	338	368	Right-handed alpha
Helix 94	AK4	D	368	373	Right-handed alpha
Helix 95	AK5	D	388	406	Right-handed alpha
Helix 96	AK6	D	408	412	Right-handed 310
Helix 97	AK7	D	427	460	Right-handed alpha
Helix 98	AK8	D	465	477	Right-handed alpha
Helix 99	AK9	D	487	501	Right-handed alpha
Helix 100	AL1	D	502	509	Right-handed alpha
Helix 101	AL2	D	510	512	Right-handed 310
Helix 102	AL3	D	513	518	Right-handed 310
Helix 103	AL4	D	519	523	Right-handed 310

There are 16 sheets in PDB entry 6V6H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	5	first strand
Strand 2	A	25	28	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	91	first strand
Strand 2	A	136	138	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	133	first strand
Strand 2	A	162	165	anti-parallel
Strand 3	A	172	173	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	322	first strand
Strand 2	A	330	331	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	25	28	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	91	first strand
Strand 2	B	136	138	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	133	first strand
Strand 2	B	162	165	anti-parallel
Strand 3	B	172	173	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	322	first strand
Strand 2	B	330	331	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	5	first strand
Strand 2	C	25	28	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	91	first strand
Strand 2	C	136	138	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	133	first strand
Strand 2	C	162	165	anti-parallel
Strand 3	C	172	173	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	322	first strand
Strand 2	C	330	331	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	5	first strand
Strand 2	D	25	28	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	91	first strand
Strand 2	D	136	138	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	133	first strand
Strand 2	D	162	165	anti-parallel
Strand 3	D	172	173	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	321	322	first strand
Strand 2	D	330	331	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V6H

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V6H