Analysis of interatomic Contacts of Structural Units in PDB entry:
6V6O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V6O entry

There are 8 chains in PDB entry 6V6O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLN 701	ASP 1014
A	GLN 701	MET 1007
B	GLN 701	ASP 1014
C	GLN 701	VAL 1011
E	GLN 701	ASP 1014
F	GLN 701	ASP 1012
G	GLN 701	ASP 1009
H	ASN 700	ASP 1014

There are141 helices in PDB entry 6V6O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	708	710	Right-handed 310
Helix 2	AA2	D	755	768	Right-handed alpha
Helix 3	AA3	D	797	805	Right-handed alpha
Helix 4	AA4	D	806	809	Right-handed 310
Helix 5	AA5	D	810	831	Right-handed alpha
Helix 6	AA6	D	839	841	Right-handed 310
Helix 7	AA7	D	857	863	Right-handed alpha
Helix 8	AA8	D	865	871	Right-handed 310
Helix 9	AA9	D	877	881	Right-handed 310
Helix 10	AB1	D	882	889	Right-handed alpha
Helix 11	AB2	D	892	909	Right-handed alpha
Helix 12	AB3	D	919	921	Right-handed 310
Helix 13	AB4	D	922	929	Right-handed alpha
Helix 14	AB5	D	940	951	Right-handed alpha
Helix 15	AB6	D	954	958	Right-handed 310
Helix 16	AB7	D	960	974	Right-handed alpha
Helix 17	AB8	D	974	979	Right-handed alpha
Helix 18	AB9	D	983	987	Right-handed 310
Helix 19	AC1	D	991	1003	Right-handed alpha
Helix 20	AC2	A	708	710	Right-handed 310
Helix 21	AC3	A	755	767	Right-handed alpha
Helix 22	AC4	A	797	805	Right-handed alpha
Helix 23	AC5	A	806	809	Right-handed 310
Helix 24	AC6	A	810	831	Right-handed alpha
Helix 25	AC7	A	839	841	Right-handed 310
Helix 26	AC8	A	857	863	Right-handed alpha
Helix 27	AC9	A	865	870	Right-handed alpha
Helix 28	AD1	A	877	881	Right-handed 310
Helix 29	AD2	A	882	889	Right-handed alpha
Helix 30	AD3	A	892	909	Right-handed alpha
Helix 31	AD4	A	919	921	Right-handed 310
Helix 32	AD5	A	922	929	Right-handed alpha
Helix 33	AD6	A	940	951	Right-handed alpha
Helix 34	AD7	A	954	958	Right-handed 310
Helix 35	AD8	A	960	973	Right-handed alpha
Helix 36	AD9	A	974	979	Right-handed alpha
Helix 37	AE1	A	983	987	Right-handed 310
Helix 38	AE2	A	991	1003	Right-handed alpha
Helix 39	AE3	B	708	710	Right-handed 310
Helix 40	AE4	B	755	768	Right-handed alpha
Helix 41	AE5	B	797	805	Right-handed alpha
Helix 42	AE6	B	810	831	Right-handed alpha
Helix 43	AE7	B	839	841	Right-handed 310
Helix 44	AE8	B	857	863	Right-handed alpha
Helix 45	AE9	B	865	871	Right-handed 310
Helix 46	AF1	B	877	881	Right-handed 310
Helix 47	AF2	B	882	889	Right-handed alpha
Helix 48	AF3	B	892	909	Right-handed alpha
Helix 49	AF4	B	919	921	Right-handed 310
Helix 50	AF5	B	922	929	Right-handed alpha
Helix 51	AF6	B	940	951	Right-handed alpha
Helix 52	AF7	B	954	958	Right-handed 310
Helix 53	AF8	B	960	973	Right-handed alpha
Helix 54	AF9	B	974	979	Right-handed alpha
Helix 55	AG1	B	983	987	Right-handed 310
Helix 56	AG2	B	991	1003	Right-handed alpha
Helix 57	AG3	C	708	710	Right-handed 310
Helix 58	AG4	C	755	767	Right-handed alpha
Helix 59	AG5	C	797	805	Right-handed alpha
Helix 60	AG6	C	806	809	Right-handed 310
Helix 61	AG7	C	810	831	Right-handed alpha
Helix 62	AG8	C	839	841	Right-handed 310
Helix 63	AG9	C	857	863	Right-handed alpha
Helix 64	AH1	C	877	881	Right-handed 310
Helix 65	AH2	C	882	889	Right-handed alpha
Helix 66	AH3	C	892	909	Right-handed alpha
Helix 67	AH4	C	919	921	Right-handed 310
Helix 68	AH5	C	922	929	Right-handed alpha
Helix 69	AH6	C	940	951	Right-handed alpha
Helix 70	AH7	C	954	958	Right-handed 310
Helix 71	AH8	C	960	973	Right-handed alpha
Helix 72	AH9	C	974	979	Right-handed alpha
Helix 73	AI1	C	983	987	Right-handed 310
Helix 74	AI2	C	991	1003	Right-handed alpha
Helix 75	AI3	E	708	710	Right-handed 310
Helix 76	AI4	E	755	767	Right-handed alpha
Helix 77	AI5	E	797	805	Right-handed alpha
Helix 78	AI6	E	810	831	Right-handed alpha
Helix 79	AI7	E	839	841	Right-handed 310
Helix 80	AI8	E	857	863	Right-handed alpha
Helix 81	AI9	E	877	881	Right-handed 310
Helix 82	AJ1	E	882	889	Right-handed alpha
Helix 83	AJ2	E	892	909	Right-handed alpha
Helix 84	AJ3	E	919	921	Right-handed 310
Helix 85	AJ4	E	922	929	Right-handed alpha
Helix 86	AJ5	E	940	951	Right-handed alpha
Helix 87	AJ6	E	954	958	Right-handed 310
Helix 88	AJ7	E	960	973	Right-handed alpha
Helix 89	AJ8	E	974	979	Right-handed alpha
Helix 90	AJ9	E	983	987	Right-handed 310
Helix 91	AK1	E	991	1003	Right-handed alpha
Helix 92	AK2	F	708	710	Right-handed 310
Helix 93	AK3	F	752	767	Right-handed alpha
Helix 94	AK4	F	797	805	Right-handed alpha
Helix 95	AK5	F	806	809	Right-handed 310
Helix 96	AK6	F	810	831	Right-handed alpha
Helix 97	AK7	F	839	841	Right-handed 310
Helix 98	AK8	F	857	862	Right-handed alpha
Helix 99	AK9	F	877	881	Right-handed 310
Helix 100	AL1	F	882	889	Right-handed alpha
Helix 101	AL2	F	892	909	Right-handed alpha
Helix 102	AL3	F	919	921	Right-handed 310
Helix 103	AL4	F	922	929	Right-handed alpha
Helix 104	AL5	F	940	951	Right-handed alpha
Helix 105	AL6	F	954	958	Right-handed 310
Helix 106	AL7	F	960	973	Right-handed alpha
Helix 107	AL8	F	974	979	Right-handed alpha
Helix 108	AL9	F	991	1003	Right-handed alpha
Helix 109	AM1	G	708	710	Right-handed 310
Helix 110	AM2	G	752	768	Right-handed alpha
Helix 111	AM3	G	797	805	Right-handed alpha
Helix 112	AM4	G	810	831	Right-handed alpha
Helix 113	AM5	G	839	841	Right-handed 310
Helix 114	AM6	G	877	881	Right-handed 310
Helix 115	AM7	G	882	889	Right-handed alpha
Helix 116	AM8	G	892	909	Right-handed alpha
Helix 117	AM9	G	919	921	Right-handed 310
Helix 118	AN1	G	922	929	Right-handed alpha
Helix 119	AN2	G	940	951	Right-handed alpha
Helix 120	AN3	G	954	958	Right-handed 310
Helix 121	AN4	G	960	973	Right-handed alpha
Helix 122	AN5	G	974	979	Right-handed alpha
Helix 123	AN6	G	983	987	Right-handed 310
Helix 124	AN7	G	991	1003	Right-handed alpha
Helix 125	AN8	H	700	704	Right-handed 310
Helix 126	AN9	H	708	710	Right-handed 310
Helix 127	AO1	H	752	767	Right-handed alpha
Helix 128	AO2	H	797	805	Right-handed alpha
Helix 129	AO3	H	810	831	Right-handed alpha
Helix 130	AO4	H	839	841	Right-handed 310
Helix 131	AO5	H	857	863	Right-handed alpha
Helix 132	AO6	H	877	881	Right-handed 310
Helix 133	AO7	H	882	889	Right-handed alpha
Helix 134	AO8	H	892	909	Right-handed alpha
Helix 135	AO9	H	919	921	Right-handed 310
Helix 136	AP1	H	922	929	Right-handed alpha
Helix 137	AP2	H	940	951	Right-handed alpha
Helix 138	AP3	H	954	958	Right-handed 310
Helix 139	AP4	H	960	973	Right-handed alpha
Helix 140	AP5	H	974	979	Right-handed alpha
Helix 141	AP6	H	991	1003	Right-handed alpha

There are 16 sheets in PDB entry 6V6O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	705	706	first strand
Strand 2	D	779	782	parallel
Strand 3	D	786	790	anti-parallel
Strand 4	D	740	747	anti-parallel
Strand 5	D	724	731	anti-parallel
Strand 6	D	712	720	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	843	847	first strand
Strand 2	D	850	853	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	705	706	first strand
Strand 2	A	779	782	parallel
Strand 3	A	786	790	anti-parallel
Strand 4	A	740	747	anti-parallel
Strand 5	A	724	731	anti-parallel
Strand 6	A	712	720	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	843	847	first strand
Strand 2	A	850	853	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	705	706	first strand
Strand 2	B	779	782	parallel
Strand 3	B	786	790	anti-parallel
Strand 4	B	740	747	anti-parallel
Strand 5	B	724	731	anti-parallel
Strand 6	B	712	720	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	843	847	first strand
Strand 2	B	850	853	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	705	706	first strand
Strand 2	C	779	782	parallel
Strand 3	C	786	790	anti-parallel
Strand 4	C	740	747	anti-parallel
Strand 5	C	724	731	anti-parallel
Strand 6	C	712	720	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	843	847	first strand
Strand 2	C	850	853	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	705	706	first strand
Strand 2	E	779	782	parallel
Strand 3	E	786	790	anti-parallel
Strand 4	E	740	747	anti-parallel
Strand 5	E	724	731	anti-parallel
Strand 6	E	712	720	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	843	847	first strand
Strand 2	E	850	853	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	705	706	first strand
Strand 2	F	779	781	parallel
Strand 3	F	787	790	anti-parallel
Strand 4	F	740	747	anti-parallel
Strand 5	F	724	731	anti-parallel
Strand 6	F	712	720	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	843	847	first strand
Strand 2	F	850	853	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	705	706	first strand
Strand 2	G	779	781	parallel
Strand 3	G	787	791	anti-parallel
Strand 4	G	740	747	anti-parallel
Strand 5	G	724	731	anti-parallel
Strand 6	G	712	720	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	843	847	first strand
Strand 2	G	850	853	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	705	706	first strand
Strand 2	H	779	782	parallel
Strand 3	H	786	790	anti-parallel
Strand 4	H	740	747	anti-parallel
Strand 5	H	724	731	anti-parallel
Strand 6	H	712	720	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	843	847	first strand
Strand 2	H	850	853	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V6O

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V6O