Analysis of interatomic Contacts of Structural Units in PDB entry:
6V6Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V6Y entry

There is 1 chain in PDB entry 6V6Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6V6Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 25Right-handed alpha
Helix 2
AA2
A
40 58Right-handed alpha
Helix 3
AA3
A
71 85Right-handed alpha
Helix 4
AA4
A
102 110Right-handed alpha
Helix 5
AA5
A
111 115Right-handed 310
Helix 6
AA6
A
120 130Right-handed alpha
Helix 7
AA7
A
136 149Right-handed alpha
Helix 8
AA8
A
167 178Right-handed alpha
Helix 9
AA9
A
191 197Right-handed alpha
Helix 10
AB1
A
213 217Right-handed 310
Helix 11
AB2
A
240 246Right-handed 310
Helix 12
AB3
A
256 277Right-handed alpha
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There are 3 sheets in PDB entry 6V6Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
249 250parallel
Strand 3
A
222 225parallel
Strand 4
A
201 204parallel
Strand 5
A
157 161parallel
Strand 6
A
181 185parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 66first strand
Strand 2
A
31 37parallel
Strand 3
A
90 93parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 231first strand
Strand 2
A
234 236anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il