Analysis of interatomic Contacts of Structural Units in PDB entry:
6V77


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V77 entry

There are 2 chains in PDB entry 6V77 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 277
B
 MET 1ASP 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6V77. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 25Right-handed alpha
Helix 2
AA2
A
32 38Right-handed alpha
Helix 3
AA3
A
39 50Right-handed alpha
Helix 4
AA4
A
100 102Right-handed 310
Helix 5
AA5
A
136 142Right-handed 310
Helix 6
AA6
A
156 161Right-handed alpha
Helix 7
AA7
A
168 172Right-handed 310
Helix 8
AA8
A
186 189Right-handed 310
Helix 9
AA9
A
212 214Right-handed 310
Helix 10
AB1
A
217 227Right-handed alpha
Helix 11
AB2
A
245 249Right-handed 310
Helix 12
AB3
B
21 25Right-handed alpha
Helix 13
AB4
B
32 39Right-handed alpha
Helix 14
AB5
B
39 50Right-handed alpha
Helix 15
AB6
B
79 86Right-handed alpha
Helix 16
AB7
B
100 102Right-handed 310
Helix 17
AB8
B
136 142Right-handed 310
Helix 18
AB9
B
156 161Right-handed alpha
Helix 19
AC1
B
168 172Right-handed 310
Helix 20
AC2
B
187 189Right-handed 310
Helix 21
AC3
B
212 214Right-handed 310
Helix 22
AC4
B
217 227Right-handed alpha
Helix 23
AC5
B
245 249Right-handed 310
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There are 8 sheets in PDB entry 6V77. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 20first strand
Strand 2
A
9 14anti-parallel
Strand 3
A
2 6anti-parallel
Strand 4
A
177 184anti-parallel
Strand 5
A
144 151anti-parallel
Strand 6
A
122 128anti-parallel
Strand 7
A
236 238anti-parallel
Strand 8
A
72 76parallel
Strand 9
A
95 97anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
2 6anti-parallel
Strand 3
A
177 184anti-parallel
Strand 4
A
104 105parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 112first strand
Strand 2
A
269 276parallel
Strand 3
A
260 265anti-parallel
Strand 4
A
196 201anti-parallel
Strand 5
A
204 210anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
154 155anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 20first strand
Strand 2
B
9 14anti-parallel
Strand 3
B
2 6anti-parallel
Strand 4
B
177 185anti-parallel
Strand 5
B
144 151anti-parallel
Strand 6
B
122 128anti-parallel
Strand 7
B
236 238anti-parallel
Strand 8
B
72 76parallel
Strand 9
B
95 97anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 63first strand
Strand 2
B
2 6anti-parallel
Strand 3
B
177 185anti-parallel
Strand 4
B
104 105parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 113first strand
Strand 2
B
269 277parallel
Strand 3
B
260 265anti-parallel
Strand 4
B
196 201anti-parallel
Strand 5
B
204 210anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
B
154 155anti-parallel
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