Analysis of interatomic Contacts of Structural Units in PDB entry:
6V78

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V78 entry

There are 3 chains in PDB entry 6V78 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	PHE 353
B	ALA 1	PHE 353
C	ALA 1	PHE 353

There are 13 helices in PDB entry 6V78. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	98	103	Right-handed alpha
Helix 2	AA2	A	175	179	Right-handed 310
Helix 3	AA3	A	208	215	Right-handed alpha
Helix 4	AA4	A	331	338	Right-handed alpha
Helix 5	AA5	B	98	106	Right-handed alpha
Helix 6	AA6	B	175	179	Right-handed 310
Helix 7	AA7	B	208	215	Right-handed alpha
Helix 8	AA8	B	332	338	Right-handed alpha
Helix 9	AA9	C	84	86	Right-handed 310
Helix 10	AB1	C	98	106	Right-handed alpha
Helix 11	AB2	C	175	179	Right-handed 310
Helix 12	AB3	C	208	215	Right-handed alpha
Helix 13	AB4	C	331	338	Right-handed alpha

There are 7 sheets in PDB entry 6V78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 19 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	6	first strand
Strand 2	A	31	32	first strand
Strand 3	A	35	47	first strand
Strand 4	A	50	61	anti-parallel
Strand 5	A	72	82	anti-parallel
Strand 6	A	88	95	anti-parallel
Strand 7	A	126	135	anti-parallel
Strand 8	A	145	152	anti-parallel
Strand 9	A	183	191	anti-parallel
Strand 10	A	196	206	anti-parallel
Strand 11	A	221	233	anti-parallel
Strand 12	A	236	246	anti-parallel
Strand 13	A	259	269	anti-parallel
Strand 14	A	275	287	anti-parallel
Strand 15	A	299	313	anti-parallel
Strand 16	A	316	325	anti-parallel
Strand 17	A	344	353	anti-parallel
Strand 18	A	9	23	anti-parallel
Strand 19	A	31	32	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	251	first strand
Strand 2	A	255	256	anti-parallel

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There are 19 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	6	first strand
Strand 2	B	31	32	first strand
Strand 3	B	35	47	first strand
Strand 4	B	50	61	anti-parallel
Strand 5	B	72	82	anti-parallel
Strand 6	B	88	95	anti-parallel
Strand 7	B	126	135	anti-parallel
Strand 8	B	145	152	anti-parallel
Strand 9	B	183	191	anti-parallel
Strand 10	B	196	206	anti-parallel
Strand 11	B	221	233	anti-parallel
Strand 12	B	236	246	anti-parallel
Strand 13	B	259	269	anti-parallel
Strand 14	B	275	287	anti-parallel
Strand 15	B	299	313	anti-parallel
Strand 16	B	316	325	anti-parallel
Strand 17	B	344	353	anti-parallel
Strand 18	B	9	23	anti-parallel
Strand 19	B	31	32	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	251	first strand
Strand 2	B	255	256	anti-parallel

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There are 19 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	6	first strand
Strand 2	C	31	32	first strand
Strand 3	C	35	47	first strand
Strand 4	C	50	61	anti-parallel
Strand 5	C	72	82	anti-parallel
Strand 6	C	88	95	anti-parallel
Strand 7	C	126	135	anti-parallel
Strand 8	C	146	152	anti-parallel
Strand 9	C	183	191	anti-parallel
Strand 10	C	196	206	anti-parallel
Strand 11	C	221	233	anti-parallel
Strand 12	C	236	246	anti-parallel
Strand 13	C	259	269	anti-parallel
Strand 14	C	275	287	anti-parallel
Strand 15	C	299	313	anti-parallel
Strand 16	C	316	325	anti-parallel
Strand 17	C	344	353	anti-parallel
Strand 18	C	9	23	anti-parallel
Strand 19	C	31	32	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	251	first strand
Strand 2	C	255	256	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	289	290	first strand
Strand 2	C	295	296	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V78

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V78