Analysis of interatomic Contacts of Structural Units in PDB entry:
6V7J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V7J entry

There are 6 chains in PDB entry 6V7J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 46	ASN 284
A	LEU 286	ARG 424
B	ASN 46	ASN 284
B	LEU 286	ARG 424
C	ASN 46	ASN 284
C	LEU 286	ARG 424

There are 29 helices in PDB entry 6V7J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	54	Right-handed 310
Helix 2	AA2	A	80	84	Right-handed 310
Helix 3	AA3	A	185	190	Right-handed 310
Helix 4	AA4	A	191	200	Right-handed alpha
Helix 5	AA5	A	202	210	Right-handed alpha
Helix 6	AA6	A	269	272	Right-handed 310
Helix 7	AA7	A	273	280	Right-handed alpha
Helix 8	AA8	A	385	390	Right-handed 310
Helix 9	AA9	A	391	399	Right-handed alpha
Helix 10	AB1	A	402	412	Right-handed alpha
Helix 11	AB2	B	52	54	Right-handed 310
Helix 12	AB3	B	80	84	Right-handed 310
Helix 13	AB4	B	185	190	Right-handed 310
Helix 14	AB5	B	191	200	Right-handed alpha
Helix 15	AB6	B	202	210	Right-handed alpha
Helix 16	AB7	B	273	278	Right-handed alpha
Helix 17	AB8	B	385	390	Right-handed 310
Helix 18	AB9	B	391	399	Right-handed alpha
Helix 19	AC1	B	402	413	Right-handed alpha
Helix 20	AC2	C	52	54	Right-handed 310
Helix 21	AC3	C	80	84	Right-handed 310
Helix 22	AC4	C	185	190	Right-handed 310
Helix 23	AC5	C	191	200	Right-handed alpha
Helix 24	AC6	C	202	211	Right-handed alpha
Helix 25	AC7	C	269	272	Right-handed 310
Helix 26	AC8	C	273	280	Right-handed alpha
Helix 27	AC9	C	385	390	Right-handed 310
Helix 28	AD1	C	391	399	Right-handed alpha
Helix 29	AD2	C	402	413	Right-handed alpha

There are 18 sheets in PDB entry 6V7J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	345	348	anti-parallel
Strand 3	A	303	310	anti-parallel
Strand 4	A	362	369	anti-parallel
Strand 5	A	281	288	anti-parallel
Strand 6	A	263	268	anti-parallel
Strand 7	A	258	259	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	62	first strand
Strand 2	A	65	70	anti-parallel
Strand 3	A	86	93	anti-parallel
Strand 4	A	157	164	anti-parallel
Strand 5	A	107	114	anti-parallel
Strand 6	A	136	140	anti-parallel
Strand 7	A	249	250	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	133	first strand
Strand 2	A	116	123	anti-parallel
Strand 3	A	146	150	anti-parallel
Strand 4	A	97	104	anti-parallel
Strand 5	A	174	176	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	133	first strand
Strand 2	A	116	123	anti-parallel
Strand 3	A	146	150	anti-parallel
Strand 4	A	97	104	anti-parallel
Strand 5	A	219	221	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	340	first strand
Strand 2	A	313	319	anti-parallel
Strand 3	A	354	358	anti-parallel
Strand 4	A	292	299	anti-parallel
Strand 5	A	376	378	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	340	first strand
Strand 2	A	313	319	anti-parallel
Strand 3	A	354	358	anti-parallel
Strand 4	A	292	299	anti-parallel
Strand 5	A	418	420	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	51	first strand
Strand 2	B	345	348	anti-parallel
Strand 3	B	303	310	anti-parallel
Strand 4	B	362	369	anti-parallel
Strand 5	B	281	288	anti-parallel
Strand 6	B	263	268	anti-parallel
Strand 7	B	258	259	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	62	first strand
Strand 2	B	65	70	anti-parallel
Strand 3	B	86	93	anti-parallel
Strand 4	B	157	164	anti-parallel
Strand 5	B	107	114	anti-parallel
Strand 6	B	136	140	anti-parallel
Strand 7	B	249	250	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	133	first strand
Strand 2	B	116	123	anti-parallel
Strand 3	B	146	150	anti-parallel
Strand 4	B	97	104	anti-parallel
Strand 5	B	174	176	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	133	first strand
Strand 2	B	116	123	anti-parallel
Strand 3	B	146	150	anti-parallel
Strand 4	B	97	104	anti-parallel
Strand 5	B	219	221	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	340	first strand
Strand 2	B	313	321	anti-parallel
Strand 3	B	354	358	anti-parallel
Strand 4	B	292	299	anti-parallel
Strand 5	B	376	378	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	340	first strand
Strand 2	B	313	321	anti-parallel
Strand 3	B	354	358	anti-parallel
Strand 4	B	292	299	anti-parallel
Strand 5	B	418	420	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	51	first strand
Strand 2	C	345	348	anti-parallel
Strand 3	C	303	310	anti-parallel
Strand 4	C	362	369	anti-parallel
Strand 5	C	281	288	anti-parallel
Strand 6	C	263	268	anti-parallel
Strand 7	C	258	259	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	62	first strand
Strand 2	C	65	70	anti-parallel
Strand 3	C	86	93	anti-parallel
Strand 4	C	157	164	anti-parallel
Strand 5	C	107	114	anti-parallel
Strand 6	C	136	140	anti-parallel
Strand 7	C	249	250	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	132	first strand
Strand 2	C	117	123	anti-parallel
Strand 3	C	146	150	anti-parallel
Strand 4	C	97	104	anti-parallel
Strand 5	C	174	176	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	132	first strand
Strand 2	C	117	123	anti-parallel
Strand 3	C	146	150	anti-parallel
Strand 4	C	97	104	anti-parallel
Strand 5	C	219	221	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	334	340	first strand
Strand 2	C	313	319	anti-parallel
Strand 3	C	354	358	anti-parallel
Strand 4	C	292	299	anti-parallel
Strand 5	C	376	378	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	334	340	first strand
Strand 2	C	313	319	anti-parallel
Strand 3	C	354	358	anti-parallel
Strand 4	C	292	299	anti-parallel
Strand 5	C	418	420	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V7J

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V7J