Analysis of interatomic Contacts of Structural Units in PDB entry:
6V7L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V7L entry

There are 2 chains in PDB entry 6V7L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 46	ARG 424
B	ASN 46	VAL 347

There are 27 helices in PDB entry 6V7L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	54	Right-handed 310
Helix 2	AA2	A	77	84	Right-handed 310
Helix 3	AA3	A	185	190	Right-handed 310
Helix 4	AA4	A	191	200	Right-handed alpha
Helix 5	AA5	A	202	210	Right-handed alpha
Helix 6	AA6	A	273	280	Right-handed alpha
Helix 7	AA7	A	385	390	Right-handed 310
Helix 8	AA8	A	391	399	Right-handed alpha
Helix 9	AA9	A	402	413	Right-handed alpha
Helix 10	AB1	B	52	54	Right-handed 310
Helix 11	AB2	B	77	84	Right-handed 310
Helix 12	AB3	B	185	190	Right-handed 310
Helix 13	AB4	B	191	200	Right-handed alpha
Helix 14	AB5	B	202	210	Right-handed alpha
Helix 15	AB6	B	273	280	Right-handed alpha
Helix 16	AB7	B	385	390	Right-handed 310
Helix 17	AB8	B	391	399	Right-handed alpha
Helix 18	AB9	B	402	413	Right-handed alpha
Helix 19	AC1	C	52	54	Right-handed 310
Helix 20	AC2	C	77	84	Right-handed 310
Helix 21	AC3	C	185	190	Right-handed 310
Helix 22	AC4	C	191	200	Right-handed alpha
Helix 23	AC5	C	202	210	Right-handed alpha
Helix 24	AC6	C	273	280	Right-handed alpha
Helix 25	AC7	C	385	390	Right-handed 310
Helix 26	AC8	C	391	399	Right-handed alpha
Helix 27	AC9	C	402	413	Right-handed alpha

There are 18 sheets in PDB entry 6V7L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	345	348	anti-parallel
Strand 3	A	303	310	anti-parallel
Strand 4	A	362	369	anti-parallel
Strand 5	A	281	288	anti-parallel
Strand 6	A	263	268	anti-parallel
Strand 7	A	258	259	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	62	first strand
Strand 2	A	65	70	anti-parallel
Strand 3	A	86	93	anti-parallel
Strand 4	A	157	164	anti-parallel
Strand 5	A	107	114	anti-parallel
Strand 6	A	136	140	anti-parallel
Strand 7	A	249	250	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	133	first strand
Strand 2	A	116	122	anti-parallel
Strand 3	A	146	150	anti-parallel
Strand 4	A	97	104	anti-parallel
Strand 5	A	174	176	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	133	first strand
Strand 2	A	116	122	anti-parallel
Strand 3	A	146	150	anti-parallel
Strand 4	A	97	104	anti-parallel
Strand 5	A	219	221	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	340	first strand
Strand 2	A	313	319	anti-parallel
Strand 3	A	354	358	anti-parallel
Strand 4	A	292	299	anti-parallel
Strand 5	A	376	378	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	340	first strand
Strand 2	A	313	319	anti-parallel
Strand 3	A	354	358	anti-parallel
Strand 4	A	292	299	anti-parallel
Strand 5	A	418	420	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	51	first strand
Strand 2	B	345	348	anti-parallel
Strand 3	B	303	310	anti-parallel
Strand 4	B	362	369	anti-parallel
Strand 5	B	281	288	anti-parallel
Strand 6	B	263	268	anti-parallel
Strand 7	B	258	259	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	62	first strand
Strand 2	B	65	70	anti-parallel
Strand 3	B	86	93	anti-parallel
Strand 4	B	157	164	anti-parallel
Strand 5	B	107	114	anti-parallel
Strand 6	B	136	140	anti-parallel
Strand 7	B	249	250	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	133	first strand
Strand 2	B	116	122	anti-parallel
Strand 3	B	146	150	anti-parallel
Strand 4	B	97	104	anti-parallel
Strand 5	B	174	176	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	133	first strand
Strand 2	B	116	122	anti-parallel
Strand 3	B	146	150	anti-parallel
Strand 4	B	97	104	anti-parallel
Strand 5	B	219	221	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	340	first strand
Strand 2	B	313	319	anti-parallel
Strand 3	B	354	358	anti-parallel
Strand 4	B	292	299	anti-parallel
Strand 5	B	376	378	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	340	first strand
Strand 2	B	313	319	anti-parallel
Strand 3	B	354	358	anti-parallel
Strand 4	B	292	299	anti-parallel
Strand 5	B	418	420	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	51	first strand
Strand 2	C	345	348	anti-parallel
Strand 3	C	303	310	anti-parallel
Strand 4	C	362	369	anti-parallel
Strand 5	C	281	288	anti-parallel
Strand 6	C	263	268	anti-parallel
Strand 7	C	258	259	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	62	first strand
Strand 2	C	65	70	anti-parallel
Strand 3	C	86	93	anti-parallel
Strand 4	C	157	164	anti-parallel
Strand 5	C	107	114	anti-parallel
Strand 6	C	136	140	anti-parallel
Strand 7	C	249	250	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	132	first strand
Strand 2	C	117	122	anti-parallel
Strand 3	C	146	150	anti-parallel
Strand 4	C	97	104	anti-parallel
Strand 5	C	174	176	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	132	first strand
Strand 2	C	117	122	anti-parallel
Strand 3	C	146	150	anti-parallel
Strand 4	C	97	104	anti-parallel
Strand 5	C	219	221	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	334	340	first strand
Strand 2	C	313	319	anti-parallel
Strand 3	C	354	358	anti-parallel
Strand 4	C	292	299	anti-parallel
Strand 5	C	376	378	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	334	340	first strand
Strand 2	C	313	319	anti-parallel
Strand 3	C	354	358	anti-parallel
Strand 4	C	292	299	anti-parallel
Strand 5	C	418	420	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V7L

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V7L