Analysis of interatomic Contacts of Structural Units in PDB entry:
6V7N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V7N entry

There are 2 chains in PDB entry 6V7N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 9LEU 384
B
 ASP 9LEU 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 6V7N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 23Right-handed alpha
Helix 2
AA2
A
70 75Right-handed 310
Helix 3
AA3
A
82 90Right-handed alpha
Helix 4
AA4
A
115 120Right-handed 310
Helix 5
AA5
A
122 129Right-handed alpha
Helix 6
AA6
A
129 143Right-handed alpha
Helix 7
AA7
A
153 166Right-handed alpha
Helix 8
AA8
A
166 171Right-handed alpha
Helix 9
AA9
A
190 197Right-handed alpha
Helix 10
AB1
A
199 208Right-handed alpha
Helix 11
AB2
A
215 224Right-handed alpha
Helix 12
AB3
A
233 237Right-handed 310
Helix 13
AB4
A
238 245Right-handed alpha
Helix 14
AB5
A
247 251Right-handed 310
Helix 15
AB6
A
255 263Right-handed alpha
Helix 16
AB7
A
268 282Right-handed alpha
Helix 17
AB8
A
291 300Right-handed alpha
Helix 18
AB9
A
308 312Right-handed 310
Helix 19
AC1
A
328 337Right-handed alpha
Helix 20
AC2
A
354 359Right-handed alpha
Helix 21
AC3
A
361 366Right-handed alpha
Helix 22
AC4
A
366 383Right-handed alpha
Helix 23
AC5
B
15 23Right-handed alpha
Helix 24
AC6
B
70 75Right-handed 310
Helix 25
AC7
B
82 90Right-handed alpha
Helix 26
AC8
B
115 120Right-handed 310
Helix 27
AC9
B
122 129Right-handed alpha
Helix 28
AD1
B
129 143Right-handed alpha
Helix 29
AD2
B
153 166Right-handed alpha
Helix 30
AD3
B
166 171Right-handed alpha
Helix 31
AD4
B
190 197Right-handed alpha
Helix 32
AD5
B
199 208Right-handed alpha
Helix 33
AD6
B
215 223Right-handed alpha
Helix 34
AD7
B
233 237Right-handed 310
Helix 35
AD8
B
238 245Right-handed alpha
Helix 36
AD9
B
247 251Right-handed 310
Helix 37
AE1
B
255 263Right-handed alpha
Helix 38
AE2
B
268 282Right-handed alpha
Helix 39
AE3
B
291 300Right-handed alpha
Helix 40
AE4
B
308 312Right-handed 310
Helix 41
AE5
B
328 337Right-handed alpha
Helix 42
AE6
B
354 359Right-handed alpha
Helix 43
AE7
B
361 366Right-handed alpha
Helix 44
AE8
B
366 383Right-handed alpha
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There are 4 sheets in PDB entry 6V7N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 33first strand
Strand 2
A
38 45anti-parallel
Strand 3
A
107 108anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 33first strand
Strand 2
A
38 45anti-parallel
Strand 3
A
93 97anti-parallel
Strand 4
A
60 64parallel
Strand 5
A
147 152parallel
Strand 6
A
173 179parallel
Strand 7
A
316 321parallel
Strand 8
A
342 348parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 33first strand
Strand 2
B
38 45anti-parallel
Strand 3
B
107 108anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 33first strand
Strand 2
B
38 45anti-parallel
Strand 3
B
93 97anti-parallel
Strand 4
B
60 64parallel
Strand 5
B
147 152parallel
Strand 6
B
173 179parallel
Strand 7
B
316 321parallel
Strand 8
B
342 348parallel
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