Analysis of interatomic Contacts of Structural Units in PDB entry:
6V7O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V7O entry

There are 4 chains in PDB entry 6V7O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 279	GLU 567
B	ALA 279	GLU 567
C	PRO 679	ARG 685
D	PRO 679	GLY 684

There are no helices in PDB entry 6V7O

There are 12 sheets in PDB entry 6V7O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	311	first strand
Strand 2	A	299	303	anti-parallel
Strand 3	A	281	286	anti-parallel
Strand 4	A	561	566	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	326	first strand
Strand 2	A	330	334	anti-parallel
Strand 3	A	346	350	anti-parallel
Strand 4	A	359	361	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	377	first strand
Strand 2	A	380	384	anti-parallel
Strand 3	A	396	400	anti-parallel
Strand 4	A	405	408	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	424	first strand
Strand 2	A	427	431	anti-parallel
Strand 3	A	443	446	anti-parallel
Strand 4	A	453	455	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	471	first strand
Strand 2	A	474	478	anti-parallel
Strand 3	A	490	494	anti-parallel
Strand 4	A	500	503	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	518	first strand
Strand 2	A	521	525	anti-parallel
Strand 3	A	534	541	anti-parallel
Strand 4	A	546	557	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	311	first strand
Strand 2	B	299	303	anti-parallel
Strand 3	B	281	286	anti-parallel
Strand 4	B	561	566	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	326	first strand
Strand 2	B	330	334	anti-parallel
Strand 3	B	346	350	anti-parallel
Strand 4	B	359	361	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	377	first strand
Strand 2	B	380	384	anti-parallel
Strand 3	B	396	400	anti-parallel
Strand 4	B	405	408	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	424	first strand
Strand 2	B	427	431	anti-parallel
Strand 3	B	443	446	anti-parallel
Strand 4	B	453	456	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	471	first strand
Strand 2	B	474	478	anti-parallel
Strand 3	B	490	494	anti-parallel
Strand 4	B	499	503	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	514	518	first strand
Strand 2	B	521	525	anti-parallel
Strand 3	B	534	541	anti-parallel
Strand 4	B	546	557	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V7O

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V7O