Analysis of interatomic Contacts of Structural Units in PDB entry:
6V7Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V7Y entry

There are 3 chains in PDB entry 6V7Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TRP 274
B
 MET 0MET 99
F
 VAL 2SER 127
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6V7Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 5Right-handed 310
Helix 2
AA2
A
56 86Right-handed alpha
Helix 3
AA3
A
135 146Right-handed alpha
Helix 4
AA4
A
148 161Right-handed alpha
Helix 5
AA5
A
161 174Right-handed alpha
Helix 6
AA6
A
174 179Right-handed alpha
Helix 7
AA7
A
262 266Right-handed 310
Helix 8
AA8
F
28 32Right-handed 310
Helix 9
AA9
F
87 91Right-handed 310
Helix 10
AB1
F
110 114Right-handed 310
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There are 10 sheets in PDB entry 6V7Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 46first strand
Strand 2
A
32 37anti-parallel
Strand 3
A
22 29anti-parallel
Strand 4
A
7 15anti-parallel
Strand 5
A
91 102anti-parallel
Strand 6
A
106 115anti-parallel
Strand 7
A
118 124anti-parallel
Strand 8
A
127 130anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 191first strand
Strand 2
A
198 208anti-parallel
Strand 3
A
240 249anti-parallel
Strand 4
A
228 229anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 191first strand
Strand 2
A
198 208anti-parallel
Strand 3
A
240 249anti-parallel
Strand 4
A
233 234anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 218first strand
Strand 2
A
257 261anti-parallel
Strand 3
A
270 272anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
50 51anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
55 56anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
36 41anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
91 94anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
4 7first strand
Strand 2
F
18 24anti-parallel
Strand 3
F
78 83anti-parallel
Strand 4
F
68 73anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
11 13first strand
Strand 2
F
121 126parallel
Strand 3
F
92 99anti-parallel
Strand 4
F
33 39anti-parallel
Strand 5
F
46 51anti-parallel
Strand 6
F
59 60anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
11 13first strand
Strand 2
F
121 126parallel
Strand 3
F
92 99anti-parallel
Strand 4
F
116 117anti-parallel
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