Analysis of interatomic Contacts of Structural Units in PDB entry:
6V80

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V80 entry

There are 8 chains in PDB entry 6V80 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 6	SER 279
B	ILE 1	MET 99
C	ASN 4	PRO 205
D	ASP 1	ASP 241
E	GLN 1	SER 118
F	LEU 7	SER 279
G	GLN 2	ASP 98
H	ASN 4	ILE 15

There are 24 helices in PDB entry 6V80. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	56	Right-handed 310
Helix 2	AA2	A	59	89	Right-handed alpha
Helix 3	AA3	A	139	150	Right-handed alpha
Helix 4	AA4	A	151	163	Right-handed alpha
Helix 5	AA5	A	164	182	Right-handed alpha
Helix 6	AA6	A	252	257	Right-handed 310
Helix 7	AA7	C	83	87	Right-handed 310
Helix 8	AA8	D	80	84	Right-handed 310
Helix 9	AA9	D	113	117	Right-handed 310
Helix 10	AB1	D	128	136	Right-handed alpha
Helix 11	AB2	D	195	200	Right-handed alpha
Helix 12	AB3	E	60	64	Right-handed 310
Helix 13	AB4	E	86	90	Right-handed 310
Helix 14	AB5	F	59	89	Right-handed alpha
Helix 15	AB6	F	138	150	Right-handed alpha
Helix 16	AB7	F	151	160	Right-handed alpha
Helix 17	AB8	F	166	175	Right-handed alpha
Helix 18	AB9	F	177	182	Right-handed alpha
Helix 19	AC1	F	252	256	Right-handed 310
Helix 20	AC2	H	83	87	Right-handed 310
Helix 21	AC3	I	80	84	Right-handed 310
Helix 22	AC4	I	113	117	Right-handed 310
Helix 23	AC5	I	128	136	Right-handed alpha
Helix 24	AC6	I	195	200	Right-handed alpha

There are 42 sheets in PDB entry 6V80. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	49	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	A	23	32	anti-parallel
Strand 4	A	10	20	anti-parallel
Strand 5	A	94	105	anti-parallel
Strand 6	A	109	118	anti-parallel
Strand 7	A	121	122	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	127	first strand
Strand 2	A	130	133	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	194	first strand
Strand 2	A	202	211	anti-parallel
Strand 3	A	243	251	anti-parallel
Strand 4	A	231	232	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	226	first strand
Strand 2	A	217	222	anti-parallel
Strand 3	A	260	264	anti-parallel
Strand 4	A	275	276	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	28	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	50	51	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	28	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	55	56	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	41	first strand
Strand 2	B	78	83	anti-parallel
Strand 3	B	91	94	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	9	first strand
Strand 2	C	21	27	anti-parallel
Strand 3	C	74	79	anti-parallel
Strand 4	C	64	69	anti-parallel
Strand 5	C	59	61	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	16	first strand
Strand 2	C	110	115	parallel
Strand 3	C	89	95	anti-parallel
Strand 4	C	34	40	anti-parallel
Strand 5	C	46	53	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	16	first strand
Strand 2	C	110	115	parallel
Strand 3	C	89	95	anti-parallel
Strand 4	C	104	106	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	127	first strand
Strand 2	C	139	142	anti-parallel
Strand 3	C	177	182	anti-parallel
Strand 4	C	158	160	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	168	first strand
Strand 2	C	173	175	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	3	first strand
Strand 2	D	22	23	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	10	first strand
Strand 2	D	106	109	parallel
Strand 3	D	86	87	anti-parallel
Strand 4	D	29	35	anti-parallel
Strand 5	D	42	47	anti-parallel
Strand 6	D	54	55	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	10	first strand
Strand 2	D	106	109	parallel
Strand 3	D	86	87	anti-parallel
Strand 4	D	29	35	anti-parallel
Strand 5	D	90	92	anti-parallel
Strand 6	D	101	102	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	18	first strand
Strand 2	D	74	76	anti-parallel
Strand 3	D	62	64	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	125	first strand
Strand 2	D	137	147	anti-parallel
Strand 3	D	185	194	anti-parallel
Strand 4	D	167	169	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	125	first strand
Strand 2	D	137	147	anti-parallel
Strand 3	D	185	194	anti-parallel
Strand 4	D	174	175	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	162	first strand
Strand 2	D	152	158	anti-parallel
Strand 3	D	204	211	anti-parallel
Strand 4	D	230	231	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	162	first strand
Strand 2	D	152	158	anti-parallel
Strand 3	D	204	211	anti-parallel
Strand 4	D	234	237	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	7	first strand
Strand 2	E	18	23	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	67	71	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	113	117	parallel
Strand 3	E	91	97	anti-parallel
Strand 4	E	36	39	anti-parallel
Strand 5	E	45	47	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	113	117	parallel
Strand 3	E	91	97	anti-parallel
Strand 4	E	108	109	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	49	first strand
Strand 2	F	35	40	anti-parallel
Strand 3	F	24	32	anti-parallel
Strand 4	F	10	18	anti-parallel
Strand 5	F	94	105	anti-parallel
Strand 6	F	109	118	anti-parallel
Strand 7	F	121	127	anti-parallel
Strand 8	F	130	133	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	189	194	first strand
Strand 2	F	202	208	anti-parallel
Strand 3	F	242	251	anti-parallel
Strand 4	F	231	232	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	189	194	first strand
Strand 2	F	202	208	anti-parallel
Strand 3	F	242	251	anti-parallel
Strand 4	F	236	238	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	225	226	first strand
Strand 2	F	216	222	anti-parallel
Strand 3	F	260	265	anti-parallel
Strand 4	F	273	276	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	8	first strand
Strand 2	G	21	28	anti-parallel
Strand 3	G	64	70	anti-parallel
Strand 4	G	50	51	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	36	38	first strand
Strand 2	G	79	83	anti-parallel
Strand 3	G	91	94	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	7	first strand
Strand 2	H	21	27	anti-parallel
Strand 3	H	74	79	anti-parallel
Strand 4	H	64	69	anti-parallel
Strand 5	H	58	61	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	16	first strand
Strand 2	H	110	115	parallel
Strand 3	H	89	95	anti-parallel
Strand 4	H	34	40	anti-parallel
Strand 5	H	46	53	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	16	first strand
Strand 2	H	110	115	parallel
Strand 3	H	89	95	anti-parallel
Strand 4	H	104	106	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	124	126	first strand
Strand 2	H	138	142	anti-parallel
Strand 3	H	177	181	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	2	3	first strand
Strand 2	I	22	23	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	8	12	first strand
Strand 2	I	106	111	parallel
Strand 3	I	86	87	anti-parallel
Strand 4	I	30	35	anti-parallel
Strand 5	I	41	47	anti-parallel
Strand 6	I	54	55	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	17	18	first strand
Strand 2	I	75	76	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	90	92	first strand
Strand 2	I	100	102	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	123	125	first strand
Strand 2	I	137	147	anti-parallel
Strand 3	I	185	194	anti-parallel
Strand 4	I	174	175	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	161	162	first strand
Strand 2	I	152	158	anti-parallel
Strand 3	I	205	211	anti-parallel
Strand 4	I	230	236	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	5	7	first strand
Strand 2	J	18	23	anti-parallel
Strand 3	J	77	82	anti-parallel
Strand 4	J	67	71	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	13	first strand
Strand 2	J	113	118	parallel
Strand 3	J	91	98	anti-parallel
Strand 4	J	33	39	anti-parallel
Strand 5	J	45	47	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	13	first strand
Strand 2	J	113	118	parallel
Strand 3	J	91	98	anti-parallel
Strand 4	J	107	109	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V80

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V80