Analysis of interatomic Contacts of Structural Units in PDB entry:
6V82


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V82 entry

There are 3 chains in PDB entry 6V82 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLY 253
B
 PHE 2HIS 83
B
 LEU 85GLU 392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 6V82. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed alpha
Helix 2
AA2
A
24 38Right-handed alpha
Helix 3
AA3
A
56 69Right-handed alpha
Helix 4
AA4
A
72 85Right-handed alpha
Helix 5
AA5
A
97 103Right-handed alpha
Helix 6
AA6
A
105 116Right-handed alpha
Helix 7
AA7
A
135 145Right-handed alpha
Helix 8
AA8
A
157 168Right-handed alpha
Helix 9
AA9
A
186 199Right-handed alpha
Helix 10
AB1
A
210 219Right-handed alpha
Helix 11
AB2
A
228 237Right-handed alpha
Helix 12
AB3
A
240 251Right-handed alpha
Helix 13
AB4
B
14 16Right-handed 310
Helix 14
AB5
B
17 32Right-handed alpha
Helix 15
AB6
B
34 48Right-handed alpha
Helix 16
AB7
B
58 65Right-handed alpha
Helix 17
AB8
B
75 82Right-handed 310
Helix 18
AB9
B
83 98Right-handed alpha
Helix 19
AC1
B
110 124Right-handed alpha
Helix 20
AC2
B
133 139Right-handed alpha
Helix 21
AC3
B
139 149Right-handed alpha
Helix 22
AC4
B
162 178Right-handed alpha
Helix 23
AC5
B
193 203Right-handed alpha
Helix 24
AC6
B
203 218Right-handed alpha
Helix 25
AC7
B
231 239Right-handed alpha
Helix 26
AC8
B
240 242Right-handed 310
Helix 27
AC9
B
258 262Right-handed 310
Helix 28
AD1
B
266 271Right-handed alpha
Helix 29
AD2
B
298 302Right-handed 310
Helix 30
AD3
B
307 316Right-handed alpha
Helix 31
AD4
B
325 341Right-handed alpha
Helix 32
AD5
B
345 359Right-handed alpha
Helix 33
AD6
B
360 362Right-handed 310
Helix 34
AD7
B
376 378Right-handed 310
Helix 35
AD8
B
379 387Right-handed alpha
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There are 4 sheets in PDB entry 6V82. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
119 122parallel
Strand 3
A
92 96parallel
Strand 4
A
42 46parallel
Strand 5
A
13 19parallel
Strand 6
A
223 226parallel
Strand 7
A
202 207parallel
Strand 8
A
172 175parallel
Strand 9
A
151 153parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 57first strand
Strand 2
B
69 73anti-parallel
Strand 3
B
367 371parallel
Strand 4
B
223 227parallel
Strand 5
B
248 254parallel
Strand 6
B
320 324parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 156first strand
Strand 2
B
126 132parallel
Strand 3
B
102 106parallel
Strand 4
B
181 183parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 276first strand
Strand 2
B
279 283anti-parallel
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