Analysis of interatomic Contacts of Structural Units in PDB entry:
6V85


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V85 entry

There are 6 chains in PDB entry 6V85 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 5HIS 2226
F
 LEU 346ILE 392
B
 PRO 199MET 270
C
 SER 198ILE 271
D
 PRO 199MET 270
E
 SER 198ILE 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 94 helices in PDB entry 6V85. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 30Right-handed alpha
Helix 2
AA2
A
49 54Right-handed alpha
Helix 3
AA3
A
58 74Right-handed alpha
Helix 4
AA4
A
93 98Right-handed alpha
Helix 5
AA5
A
107 140Right-handed alpha
Helix 6
AA6
A
160 169Right-handed alpha
Helix 7
AA7
A
174 197Right-handed alpha
Helix 8
AA8
A
235 257Right-handed alpha
Helix 9
AA9
A
261 283Right-handed alpha
Helix 10
AB1
A
284 302Right-handed alpha
Helix 11
AB2
A
310 328Right-handed alpha
Helix 12
AB3
A
334 346Right-handed alpha
Helix 13
AB4
A
352 364Right-handed alpha
Helix 14
AB5
A
372 383Right-handed alpha
Helix 15
AB6
A
391 415Right-handed alpha
Helix 16
AB7
A
427 437Right-handed alpha
Helix 17
AB8
A
442 448Right-handed alpha
Helix 18
AB9
A
471 475Right-handed 310
Helix 19
AC1
A
485 490Right-handed alpha
Helix 20
AC2
A
513 520Right-handed alpha
Helix 21
AC3
A
527 534Right-handed alpha
Helix 22
AC4
A
566 583Right-handed alpha
Helix 23
AC5
A
584 587Right-handed 310
Helix 24
AC6
A
597 611Right-handed alpha
Helix 25
AC7
A
665 671Right-handed 310
Helix 26
AC8
A
672 675Right-handed 310
Helix 27
AC9
A
676 687Right-handed alpha
Helix 28
AD1
A
694 702Right-handed alpha
Helix 29
AD2
A
743 761Right-handed alpha
Helix 30
AD3
A
788 815Right-handed alpha
Helix 31
AD4
A
846 851Right-handed alpha
Helix 32
AD5
A
863 881Right-handed alpha
Helix 33
AD6
A
884 905Right-handed alpha
Helix 34
AD7
A
915 923Right-handed alpha
Helix 35
AD8
A
923 932Right-handed alpha
Helix 36
AD9
A
934 938Right-handed 310
Helix 37
AE1
A
945 950Right-handed 310
Helix 38
AE2
A
955 971Right-handed alpha
Helix 39
AE3
A
976 983Right-handed alpha
Helix 40
AE4
A
990 997Right-handed alpha
Helix 41
AE5
A
1008 1023Right-handed alpha
Helix 42
AE6
A
1028 1034Right-handed 310
Helix 43
AE7
A
1035 1036Right-handed 310
Helix 44
AE8
A
1037 1051Right-handed alpha
Helix 45
AE9
A
1056 1067Right-handed alpha
Helix 46
AF1
A
1067 1078Right-handed alpha
Helix 47
AF2
A
1082 1091Right-handed alpha
Helix 48
AF3
A
1097 1105Right-handed alpha
Helix 49
AF4
A
1105 1117Right-handed alpha
Helix 50
AF5
A
1124 1132Right-handed alpha
Helix 51
AF6
A
1136 1154Right-handed alpha
Helix 52
AF7
A
1165 1170Right-handed alpha
Helix 53
AF8
A
1237 1250Right-handed alpha
Helix 54
AF9
A
1256 1271Right-handed alpha
Helix 55
AG1
A
1333 1352Right-handed alpha
Helix 56
AG2
A
1438 1452Right-handed alpha
Helix 57
AG3
A
1485 1502Right-handed alpha
Helix 58
AG4
A
1510 1523Right-handed alpha
Helix 59
AG5
A
1525 1537Right-handed alpha
Helix 60
AG6
A
1540 1549Right-handed alpha
Helix 61
AG7
A
1566 1586Right-handed alpha
Helix 62
AG8
A
1605 1624Right-handed alpha
Helix 63
AG9
A
1636 1649Right-handed alpha
Helix 64
AH1
A
1650 1652Right-handed 310
Helix 65
AH2
A
1658 1665Right-handed alpha
Helix 66
AH3
A
1678 1690Right-handed alpha
Helix 67
AH4
A
1697 1701Right-handed 310
Helix 68
AH5
A
1768 1775Right-handed 310
Helix 69
AH6
A
1783 1796Right-handed alpha
Helix 70
AH7
A
1814 1822Right-handed alpha
Helix 71
AH8
A
1848 1862Right-handed alpha
Helix 72
AH9
A
1890 1899Right-handed alpha
Helix 73
AI1
A
1923 1935Right-handed alpha
Helix 74
AI2
A
1952 1964Right-handed alpha
Helix 75
AI3
A
2001 2012Right-handed alpha
Helix 76
AI4
A
2021 2045Right-handed alpha
Helix 77
AI5
A
2053 2061Right-handed alpha
Helix 78
AI6
A
2083 2104Right-handed alpha
Helix 79
AI7
A
2126 2144Right-handed alpha
Helix 80
AI8
A
2145 2147Right-handed 310
Helix 81
AI9
A
2149 2161Right-handed alpha
Helix 82
AJ1
A
2170 2175Right-handed 310
Helix 83
AJ2
A
2187 2191Right-handed alpha
Helix 84
AJ3
A
2194 2200Right-handed alpha
Helix 85
AJ4
A
2208 2226Right-handed alpha
Helix 86
AJ5
F
347 358Right-handed alpha
Helix 87
AJ6
F
360 374Right-handed alpha
Helix 88
AJ7
F
376 390Right-handed alpha
Helix 89
AJ8
B
201 204Right-handed 310
Helix 90
AJ9
B
205 270Right-handed alpha
Helix 91
AK1
C
201 271Right-handed alpha
Helix 92
AK2
D
201 204Right-handed 310
Helix 93
AK3
D
205 270Right-handed alpha
Helix 94
AK4
E
201 270Right-handed alpha
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There are 7 sheets in PDB entry 6V85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 207first strand
Strand 2
A
212 215anti-parallel
Strand 3
A
219 222anti-parallel
Strand 4
A
231 234anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
765 771first strand
Strand 2
A
774 780anti-parallel
Strand 3
A
658 662anti-parallel
Strand 4
A
823 826anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
704 705first strand
Strand 2
A
732 733anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
829 832first strand
Strand 2
A
835 838anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1173 1176first strand
Strand 2
A
1363 1367anti-parallel
Strand 3
A
1192 1196anti-parallel
Strand 4
A
1316 1318anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1593 1594first strand
Strand 2
A
1674 1675parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1828 1829first strand
Strand 2
A
1805 1806parallel
Strand 3
A
1908 1911parallel
Strand 4
A
1944 1947parallel
Strand 5
A
1986 1987anti-parallel
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