Analysis of interatomic Contacts of Structural Units in PDB entry:
6V8B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V8B entry

There is 1 chain in PDB entry 6V8B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1286ASP 1664
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 6V8B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1296 1314Right-handed alpha
Helix 2
AA2
A
1336 1344Right-handed alpha
Helix 3
AA3
A
1409 1429Right-handed alpha
Helix 4
AA4
A
1459 1477Right-handed alpha
Helix 5
AA5
A
1486 1493Right-handed alpha
Helix 6
AA6
A
1497 1501Right-handed 310
Helix 7
AA7
A
1507 1517Right-handed alpha
Helix 8
AA8
A
1581 1592Right-handed alpha
Helix 9
AA9
A
1602 1607Right-handed 310
Helix 10
AB1
A
1627 1637Right-handed alpha
Helix 11
AB2
A
1643 1663Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6V8B.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1321 1332first strand
Strand 2
A
1354 1366anti-parallel
Strand 3
A
1369 1381anti-parallel
Strand 4
A
1392 1400anti-parallel
Strand 5
A
1432 1436parallel
Strand 6
A
1595 1599anti-parallel
Strand 7
A
1482 1485anti-parallel
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