Analysis of interatomic Contacts of Structural Units in PDB entry:
6V8C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V8C entry

There are 3 chains in PDB entry 6V8C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 36PHE 439
B
 GLY 36PHE 439
C
 GLY 36PHE 439
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 48 helices in PDB entry 6V8C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 51Right-handed alpha
Helix 2
AA2
A
82 87Right-handed alpha
Helix 3
AA3
A
94 106Right-handed alpha
Helix 4
AA4
A
119 132Right-handed alpha
Helix 5
AA5
A
141 160Right-handed alpha
Helix 6
AA6
A
181 187Right-handed alpha
Helix 7
AA7
A
190 195Right-handed alpha
Helix 8
AA8
A
211 219Right-handed alpha
Helix 9
AA9
A
244 256Right-handed alpha
Helix 10
AB1
A
276 282Right-handed 310
Helix 11
AB2
A
291 296Right-handed 310
Helix 12
AB3
A
307 312Right-handed alpha
Helix 13
AB4
A
326 343Right-handed alpha
Helix 14
AB5
A
344 361Right-handed alpha
Helix 15
AB6
A
389 400Right-handed alpha
Helix 16
AB7
A
421 437Right-handed alpha
Helix 17
AB8
B
39 51Right-handed alpha
Helix 18
AB9
B
82 87Right-handed alpha
Helix 19
AC1
B
94 106Right-handed alpha
Helix 20
AC2
B
119 132Right-handed alpha
Helix 21
AC3
B
141 160Right-handed alpha
Helix 22
AC4
B
181 187Right-handed alpha
Helix 23
AC5
B
190 195Right-handed alpha
Helix 24
AC6
B
211 219Right-handed alpha
Helix 25
AC7
B
244 256Right-handed alpha
Helix 26
AC8
B
276 282Right-handed 310
Helix 27
AC9
B
291 296Right-handed 310
Helix 28
AD1
B
307 312Right-handed alpha
Helix 29
AD2
B
326 343Right-handed alpha
Helix 30
AD3
B
344 361Right-handed alpha
Helix 31
AD4
B
389 400Right-handed alpha
Helix 32
AD5
B
421 437Right-handed alpha
Helix 33
AD6
C
39 51Right-handed alpha
Helix 34
AD7
C
82 87Right-handed alpha
Helix 35
AD8
C
94 106Right-handed alpha
Helix 36
AD9
C
119 132Right-handed alpha
Helix 37
AE1
C
141 160Right-handed alpha
Helix 38
AE2
C
181 187Right-handed alpha
Helix 39
AE3
C
190 195Right-handed alpha
Helix 40
AE4
C
211 219Right-handed alpha
Helix 41
AE5
C
244 256Right-handed alpha
Helix 42
AE6
C
276 282Right-handed 310
Helix 43
AE7
C
291 296Right-handed 310
Helix 44
AE8
C
307 312Right-handed alpha
Helix 45
AE9
C
326 343Right-handed alpha
Helix 46
AF1
C
344 361Right-handed alpha
Helix 47
AF2
C
389 400Right-handed alpha
Helix 48
AF3
C
421 437Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 6V8C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
69 72anti-parallel
Strand 3
A
77 80anti-parallel
Strand 4
A
402 403parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 139first strand
Strand 2
A
302 306anti-parallel
Strand 3
A
287 290anti-parallel
Strand 4
A
259 263parallel
Strand 5
A
224 229parallel
Strand 6
A
169 173parallel
Strand 7
A
204 207parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 374first strand
Strand 2
A
377 382anti-parallel
Strand 3
A
411 414anti-parallel
Strand 4
A
406 407anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 66first strand
Strand 2
B
69 72anti-parallel
Strand 3
B
77 80anti-parallel
Strand 4
B
402 403parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 139first strand
Strand 2
B
302 306anti-parallel
Strand 3
B
287 290anti-parallel
Strand 4
B
259 263parallel
Strand 5
B
224 229parallel
Strand 6
B
169 173parallel
Strand 7
B
204 207parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 374first strand
Strand 2
B
377 382anti-parallel
Strand 3
B
411 414anti-parallel
Strand 4
B
406 407anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 66first strand
Strand 2
C
69 72anti-parallel
Strand 3
C
77 80anti-parallel
Strand 4
C
402 403parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
135 139first strand
Strand 2
C
302 306anti-parallel
Strand 3
C
287 290anti-parallel
Strand 4
C
259 263parallel
Strand 5
C
224 229parallel
Strand 6
C
169 173parallel
Strand 7
C
204 207parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
368 374first strand
Strand 2
C
377 382anti-parallel
Strand 3
C
411 414anti-parallel
Strand 4
C
406 407anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il