Analysis of interatomic Contacts of Structural Units in PDB entry:
6V8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V8J entry

There are 4 chains in PDB entry 6V8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2ASN 153
B
 GLY 2ASN 153
C
 GLY 2ASN 153
D
 GLY 2ASN 153
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6V8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 24Right-handed alpha
Helix 2
AA2
A
26 35Right-handed alpha
Helix 3
AA3
A
76 78Right-handed 310
Helix 4
AA4
A
123 125Right-handed 310
Helix 5
AA5
A
128 152Right-handed alpha
Helix 6
AA6
B
15 24Right-handed alpha
Helix 7
AA7
B
26 35Right-handed alpha
Helix 8
AA8
B
76 78Right-handed 310
Helix 9
AA9
B
128 152Right-handed alpha
Helix 10
AB1
C
15 24Right-handed alpha
Helix 11
AB2
C
26 35Right-handed alpha
Helix 12
AB3
C
128 152Right-handed alpha
Helix 13
AB4
D
15 24Right-handed alpha
Helix 14
AB5
D
26 35Right-handed alpha
Helix 15
AB6
D
76 78Right-handed 310
Helix 16
AB7
D
128 152Right-handed alpha
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There are 2 sheets in PDB entry 6V8J. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 45first strand
Strand 2
A
53 60anti-parallel
Strand 3
A
63 75anti-parallel
Strand 4
A
80 87anti-parallel
Strand 5
A
95 107anti-parallel
Strand 6
A
110 121anti-parallel
Strand 7
A
3 12anti-parallel
Strand 8
C
3 12parallel
Strand 9
C
110 121anti-parallel
Strand 10
C
95 107anti-parallel
Strand 11
C
80 87anti-parallel
Strand 12
C
63 75anti-parallel
Strand 13
C
53 60anti-parallel
Strand 14
C
38 45anti-parallel
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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 45first strand
Strand 2
B
53 60anti-parallel
Strand 3
B
63 75anti-parallel
Strand 4
B
80 87anti-parallel
Strand 5
B
95 107anti-parallel
Strand 6
B
110 121anti-parallel
Strand 7
B
3 12anti-parallel
Strand 8
D
3 12parallel
Strand 9
D
110 121anti-parallel
Strand 10
D
95 107anti-parallel
Strand 11
D
80 87anti-parallel
Strand 12
D
63 75anti-parallel
Strand 13
D
53 60anti-parallel
Strand 14
D
38 45anti-parallel
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