Analysis of interatomic Contacts of Structural Units in PDB entry:
6V8O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V8O entry

There are 22 chains in PDB entry 6V8O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ASN 17	ARG 76
D	MET 6	ALA 127
E	SER 316	ILE 435
F	GLY 787	MET 881
G	SER 152	ASN 204
H	MET 443	PRO 625
I	ASN 57	VAL 368
J	SER 387	GLN 501
K	SER 387	ASP 512
L	TYR 58	GLY 377
M	GLN 4	LEU 483
N	MET 28	THR 578
O	LYS 9	ALA 492
Q	SER 2	LYS 385
R	GLU 43	LYS 318
S	ALA 194	GLN 227
2	UNK 332	UNK 359
3	UNK 2	UNK 20
4	UNK 0	UNK 18
5	UNK 3	UNK 16
6	UNK 420	UNK 434
7	UNK 23	UNK 73

There are125 helices in PDB entry 6V8O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	20	40	Right-handed alpha
Helix 2	AA2	C	45	54	Right-handed alpha
Helix 3	AA3	C	54	75	Right-handed alpha
Helix 4	AA4	D	7	18	Right-handed alpha
Helix 5	AA5	D	27	35	Right-handed alpha
Helix 6	AA6	D	72	79	Right-handed alpha
Helix 7	AA7	D	93	99	Right-handed alpha
Helix 8	AA8	D	101	113	Right-handed alpha
Helix 9	AA9	D	115	125	Right-handed alpha
Helix 10	AB1	E	318	343	Right-handed alpha
Helix 11	AB2	E	400	404	Right-handed 310
Helix 12	AB3	E	406	411	Right-handed alpha
Helix 13	AB4	E	415	433	Right-handed alpha
Helix 14	AB5	F	862	867	Right-handed 310
Helix 15	AB6	F	871	881	Right-handed alpha
Helix 16	AB7	G	173	196	Right-handed alpha
Helix 17	AB8	H	459	468	Right-handed alpha
Helix 18	AB9	I	58	72	Right-handed alpha
Helix 19	AC1	I	95	102	Right-handed alpha
Helix 20	AC2	I	103	106	Right-handed 310
Helix 21	AC3	I	114	132	Right-handed alpha
Helix 22	AC4	I	138	146	Right-handed alpha
Helix 23	AC5	I	149	163	Right-handed alpha
Helix 24	AC6	I	171	175	Right-handed 310
Helix 25	AC7	I	237	244	Right-handed alpha
Helix 26	AC8	I	246	251	Right-handed alpha
Helix 27	AC9	I	283	289	Right-handed alpha
Helix 28	AD1	I	297	299	Right-handed 310
Helix 29	AD2	I	316	330	Right-handed alpha
Helix 30	AD3	I	333	342	Right-handed alpha
Helix 31	AD4	I	346	356	Right-handed alpha
Helix 32	AD5	I	360	368	Right-handed alpha
Helix 33	AD6	J	388	403	Right-handed alpha
Helix 34	AD7	J	406	490	Right-handed alpha
Helix 35	AD8	K	388	402	Right-handed alpha
Helix 36	AD9	K	421	489	Right-handed alpha
Helix 37	AE1	L	59	76	Right-handed alpha
Helix 38	AE2	L	83	87	Right-handed 310
Helix 39	AE3	L	96	102	Right-handed alpha
Helix 40	AE4	L	114	131	Right-handed alpha
Helix 41	AE5	L	138	145	Right-handed alpha
Helix 42	AE6	L	149	163	Right-handed alpha
Helix 43	AE7	L	171	175	Right-handed 310
Helix 44	AE8	L	288	292	Right-handed 310
Helix 45	AE9	L	298	304	Right-handed alpha
Helix 46	AF1	L	316	330	Right-handed alpha
Helix 47	AF2	L	333	342	Right-handed alpha
Helix 48	AF3	L	346	356	Right-handed alpha
Helix 49	AF4	L	360	377	Right-handed alpha
Helix 50	AF5	M	29	51	Right-handed alpha
Helix 51	AF6	M	237	242	Right-handed alpha
Helix 52	AF7	M	248	263	Right-handed alpha
Helix 53	AF8	M	268	275	Right-handed alpha
Helix 54	AF9	M	316	324	Right-handed alpha
Helix 55	AG1	M	331	342	Right-handed alpha
Helix 56	AG2	M	372	377	Right-handed alpha
Helix 57	AG3	M	387	425	Right-handed alpha
Helix 58	AG4	M	425	445	Right-handed alpha
Helix 59	AG5	M	452	457	Right-handed alpha
Helix 60	AG6	M	470	472	Right-handed 310
Helix 61	AG7	M	473	480	Right-handed alpha
Helix 62	AG8	N	40	46	Right-handed alpha
Helix 63	AG9	N	65	70	Right-handed 310
Helix 64	AH1	N	80	92	Right-handed alpha
Helix 65	AH2	N	93	111	Right-handed alpha
Helix 66	AH3	N	123	140	Right-handed alpha
Helix 67	AH4	N	148	170	Right-handed alpha
Helix 68	AH5	N	171	180	Right-handed alpha
Helix 69	AH6	N	181	201	Right-handed alpha
Helix 70	AH7	N	208	210	Right-handed 310
Helix 71	AH8	N	211	231	Right-handed alpha
Helix 72	AH9	N	240	253	Right-handed alpha
Helix 73	AI1	N	255	269	Right-handed alpha
Helix 74	AI2	N	279	284	Right-handed 310
Helix 75	AI3	N	285	298	Right-handed alpha
Helix 76	AI4	N	301	317	Right-handed alpha
Helix 77	AI5	N	320	329	Right-handed alpha
Helix 78	AI6	N	329	345	Right-handed alpha
Helix 79	AI7	N	353	359	Right-handed alpha
Helix 80	AI8	N	524	539	Right-handed alpha
Helix 81	AI9	N	546	564	Right-handed alpha
Helix 82	AJ1	N	564	571	Right-handed alpha
Helix 83	AJ2	N	571	577	Right-handed alpha
Helix 84	AJ3	O	10	25	Right-handed alpha
Helix 85	AJ4	O	29	33	Right-handed 310
Helix 86	AJ5	O	43	45	Right-handed 310
Helix 87	AJ6	O	46	61	Right-handed alpha
Helix 88	AJ7	O	75	82	Right-handed alpha
Helix 89	AJ8	O	88	110	Right-handed alpha
Helix 90	AJ9	O	114	138	Right-handed alpha
Helix 91	AK1	O	170	179	Right-handed alpha
Helix 92	AK2	O	243	248	Right-handed alpha
Helix 93	AK3	O	302	314	Right-handed alpha
Helix 94	AK4	O	389	394	Right-handed alpha
Helix 95	AK5	O	403	412	Right-handed alpha
Helix 96	AK6	O	415	436	Right-handed alpha
Helix 97	AK7	O	442	462	Right-handed alpha
Helix 98	AK8	Q	3	7	Right-handed 310
Helix 99	AK9	Q	15	22	Right-handed alpha
Helix 100	AL1	Q	161	167	Right-handed 310
Helix 101	AL2	Q	168	177	Right-handed alpha
Helix 102	AL3	Q	231	244	Right-handed alpha
Helix 103	AL4	Q	247	265	Right-handed alpha
Helix 104	AL5	Q	265	270	Right-handed alpha
Helix 105	AL6	Q	306	319	Right-handed alpha
Helix 106	AL7	Q	323	345	Right-handed alpha
Helix 107	AL8	R	51	66	Right-handed alpha
Helix 108	AL9	R	68	73	Right-handed alpha
Helix 109	AM1	R	74	102	Right-handed alpha
Helix 110	AM2	R	111	127	Right-handed alpha
Helix 111	AM3	R	132	136	Right-handed 310
Helix 112	AM4	R	166	172	Right-handed alpha
Helix 113	AM5	R	175	179	Right-handed 310
Helix 114	AM6	R	188	208	Right-handed alpha
Helix 115	AM7	R	236	250	Right-handed alpha
Helix 116	AM8	R	250	267	Right-handed alpha
Helix 117	AM9	R	268	273	Right-handed alpha
Helix 118	AN1	R	273	278	Right-handed alpha
Helix 119	AN2	R	279	290	Right-handed alpha
Helix 120	AN3	R	298	318	Right-handed alpha
Helix 121	AN4	S	204	227	Right-handed alpha
Helix 122	AN5	3	3	20	Right-handed alpha
Helix 123	AN6	4	1	18	Right-handed alpha
Helix 124	AN7	5	4	16	Right-handed alpha
Helix 125	AN8	6	421	434	Right-handed alpha

There are 17 sheets in PDB entry 6V8O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	349	351	first strand
Strand 2	E	356	360	anti-parallel
Strand 3	L	179	180	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	368	373	first strand
Strand 2	I	186	192	anti-parallel
Strand 3	E	384	391	parallel
Strand 4	I	229	235	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	157	160	first strand
Strand 2	S	198	201	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	589	594	first strand
Strand 2	H	508	515	anti-parallel
Strand 3	H	451	458	anti-parallel
Strand 4	H	480	486	anti-parallel
Strand 5	L	257	262	parallel
Strand 6	L	267	277	anti-parallel
Strand 7	O	180	190	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	522	526	first strand
Strand 2	H	598	607	anti-parallel
Strand 3	H	614	623	anti-parallel
Strand 4	H	497	502	parallel
Strand 5	O	227	231	parallel
Strand 6	O	192	198	anti-parallel
Strand 7	O	203	205	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	80	83	first strand
Strand 2	L	189	192	parallel
Strand 3	L	197	199	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	256	257	first strand
Strand 2	N	47	48	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	281	282	first strand
Strand 2	I	270	274	anti-parallel
Strand 3	I	301	305	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	493	497	first strand
Strand 2	K	506	510	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	368	369	first strand
Strand 2	M	74	81	anti-parallel
Strand 3	7	24	31	parallel
Strand 4	7	37	40	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	349	352	first strand
Strand 2	M	219	222	anti-parallel
Strand 3	7	61	65	parallel
Strand 4	7	52	56	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	246	247	first strand
Strand 2	M	232	234	anti-parallel
Strand 3	M	343	344	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	313	314	first strand
Strand 2	M	329	330	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	476	477	first strand
Strand 2	R	215	216	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	13	14	first strand
Strand 2	Q	179	180	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	203	212	first strand
Strand 2	Q	215	224	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	278	286	first strand
Strand 2	Q	290	299	anti-parallel
Strand 3	Q	379	382	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V8O

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V8O