Analysis of interatomic Contacts of Structural Units in PDB entry:
6V8P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V8P entry

There are 5 chains in PDB entry 6V8P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 21	ASP 1488
D	ASN 2	LEU 219
E	ASN 2	LEU 219
F	LEU -1	ASP 486
G	MET 1	LYS 116

There are 61 helices in PDB entry 6V8P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	95	116	Right-handed alpha
Helix 2	AA2	A	165	179	Right-handed alpha
Helix 3	AA3	A	194	203	Right-handed alpha
Helix 4	AA4	A	228	233	Right-handed alpha
Helix 5	AA5	A	235	246	Right-handed alpha
Helix 6	AA6	A	309	322	Right-handed alpha
Helix 7	AA7	A	345	360	Right-handed alpha
Helix 8	AA8	A	385	390	Right-handed alpha
Helix 9	AA9	A	531	540	Right-handed alpha
Helix 10	AB1	A	560	564	Right-handed 310
Helix 11	AB2	A	612	622	Right-handed alpha
Helix 12	AB3	A	725	735	Right-handed alpha
Helix 13	AB4	A	744	760	Right-handed alpha
Helix 14	AB5	A	772	784	Right-handed alpha
Helix 15	AB6	A	789	794	Right-handed alpha
Helix 16	AB7	A	825	834	Right-handed alpha
Helix 17	AB8	A	840	849	Right-handed alpha
Helix 18	AB9	A	857	866	Right-handed alpha
Helix 19	AC1	A	870	896	Right-handed alpha
Helix 20	AC2	A	896	909	Right-handed alpha
Helix 21	AC3	A	913	918	Right-handed alpha
Helix 22	AC4	A	920	934	Right-handed alpha
Helix 23	AC5	A	943	949	Right-handed alpha
Helix 24	AC6	A	978	988	Right-handed alpha
Helix 25	AC7	A	1019	1024	Right-handed alpha
Helix 26	AC8	A	1044	1066	Right-handed alpha
Helix 27	AC9	A	1071	1095	Right-handed alpha
Helix 28	AD1	A	1106	1130	Right-handed alpha
Helix 29	AD2	A	1154	1171	Right-handed alpha
Helix 30	AD3	A	1224	1241	Right-handed alpha
Helix 31	AD4	A	1243	1261	Right-handed alpha
Helix 32	AD5	A	1329	1335	Right-handed alpha
Helix 33	AD6	A	1344	1361	Right-handed alpha
Helix 34	AD7	A	1366	1372	Right-handed alpha
Helix 35	AD8	A	1425	1455	Right-handed alpha
Helix 36	AD9	A	1460	1466	Right-handed alpha
Helix 37	AE1	A	1473	1487	Right-handed alpha
Helix 38	AE2	D	3	23	Right-handed alpha
Helix 39	AE3	D	51	68	Right-handed alpha
Helix 40	AE4	D	109	129	Right-handed alpha
Helix 41	AE5	E	4	24	Right-handed alpha
Helix 42	AE6	E	28	30	Right-handed 310
Helix 43	AE7	E	51	69	Right-handed alpha
Helix 44	AE8	E	109	130	Right-handed alpha
Helix 45	AE9	E	164	175	Right-handed alpha
Helix 46	AF1	F	0	9	Right-handed alpha
Helix 47	AF2	F	30	34	Right-handed 310
Helix 48	AF3	F	52	76	Right-handed alpha
Helix 49	AF4	F	92	96	Right-handed 310
Helix 50	AF5	F	115	124	Right-handed alpha
Helix 51	AF6	F	132	138	Right-handed alpha
Helix 52	AF7	F	227	241	Right-handed alpha
Helix 53	AF8	F	247	252	Right-handed alpha
Helix 54	AF9	F	272	291	Right-handed alpha
Helix 55	AG1	F	321	327	Right-handed 310
Helix 56	AG2	F	357	364	Right-handed alpha
Helix 57	AG3	F	391	405	Right-handed alpha
Helix 58	AG4	F	411	416	Right-handed alpha
Helix 59	AG5	G	3	15	Right-handed alpha
Helix 60	AG6	G	22	30	Right-handed alpha
Helix 61	AG7	G	32	45	Right-handed alpha

There are 23 sheets in PDB entry 6V8P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	210	213	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	35	first strand
Strand 2	A	56	64	anti-parallel
Strand 3	A	70	75	anti-parallel
Strand 4	A	267	270	parallel
Strand 5	A	217	218	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	A	188	189	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	163	first strand
Strand 2	A	137	147	anti-parallel
Strand 3	A	937	938	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	581	582	first strand
Strand 2	D	37	38	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	177	179	first strand
Strand 2	A	600	606	anti-parallel
Strand 3	E	139	149	anti-parallel
Strand 4	E	72	81	anti-parallel
Strand 5	E	87	94	anti-parallel
Strand 6	E	211	214	anti-parallel
Strand 7	E	202	206	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	670	676	first strand
Strand 2	A	691	698	anti-parallel
Strand 3	A	712	717	anti-parallel
Strand 4	A	739	742	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	763	764	first strand
Strand 2	A	822	823	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	959	960	first strand
Strand 2	A	1138	1142	anti-parallel
Strand 3	A	1145	1149	anti-parallel
Strand 4	A	971	976	anti-parallel
Strand 5	A	1184	1192	anti-parallel
Strand 6	A	1179	1180	first strand

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	966	967	first strand
Strand 2	A	1184	1192	anti-parallel
Strand 3	A	971	976	anti-parallel
Strand 4	A	1195	1200	first strand
Strand 5	A	1210	1214	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	994	997	first strand
Strand 2	A	1034	1036	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1006	1008	first strand
Strand 2	A	1011	1013	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1270	1274	first strand
Strand 2	A	1310	1314	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	33	first strand
Strand 2	D	48	49	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	145	first strand
Strand 2	D	75	81	anti-parallel
Strand 3	D	87	92	anti-parallel
Strand 4	D	215	218	anti-parallel
Strand 5	D	200	201	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	37	first strand
Strand 2	E	41	49	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	24	first strand
Strand 2	G	109	110	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	88	89	first strand
Strand 2	F	102	103	parallel
Strand 3	F	176	177	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	172	173	first strand
Strand 2	F	106	109	anti-parallel
Strand 3	F	147	149	anti-parallel
Strand 4	F	154	157	anti-parallel
Strand 5	F	184	185	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	114	first strand
Strand 2	F	366	367	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	336	338	first strand
Strand 2	F	295	298	parallel
Strand 3	F	254	259	parallel
Strand 4	F	213	217	parallel
Strand 5	F	470	474	anti-parallel
Strand 6	F	480	483	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	343	347	first strand
Strand 2	F	350	355	anti-parallel
Strand 3	F	435	441	parallel
Strand 4	F	456	462	parallel
Strand 5	F	445	449	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	20	21	first strand
Strand 2	G	82	89	anti-parallel
Strand 3	G	53	59	anti-parallel
Strand 4	G	65	67	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V8P

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V8P