Analysis of interatomic Contacts of Structural Units in PDB entry:
6V8Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V8Q entry

There are 2 chains in PDB entry 6V8Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 7ASN 586
B
 ARG 7ASN 586
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 6V8Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 34Right-handed alpha
Helix 2
AA2
A
34 41Right-handed alpha
Helix 3
AA3
A
48 72Right-handed alpha
Helix 4
AA4
A
72 80Right-handed alpha
Helix 5
AA5
A
82 112Right-handed alpha
Helix 6
AA6
A
116 125Right-handed alpha
Helix 7
AA7
A
133 159Right-handed alpha
Helix 8
AA8
A
170 194Right-handed alpha
Helix 9
AA9
A
196 201Right-handed alpha
Helix 10
AB1
A
214 221Right-handed alpha
Helix 11
AB2
A
227 237Right-handed alpha
Helix 12
AB3
A
274 279Right-handed alpha
Helix 13
AB4
A
279 288Right-handed alpha
Helix 14
AB5
A
301 312Right-handed alpha
Helix 15
AB6
A
314 316Right-handed 310
Helix 16
AB7
A
317 325Right-handed alpha
Helix 17
AB8
A
328 337Right-handed alpha
Helix 18
AB9
A
351 357Right-handed alpha
Helix 19
AC1
A
371 385Right-handed alpha
Helix 20
AC2
A
411 437Right-handed alpha
Helix 21
AC3
A
465 470Right-handed alpha
Helix 22
AC4
A
491 502Right-handed alpha
Helix 23
AC5
A
508 512Right-handed 310
Helix 24
AC6
A
569 581Right-handed alpha
Helix 25
AC7
B
8 41Right-handed alpha
Helix 26
AC8
B
46 72Right-handed alpha
Helix 27
AC9
B
72 80Right-handed alpha
Helix 28
AD1
B
82 112Right-handed alpha
Helix 29
AD2
B
116 124Right-handed alpha
Helix 30
AD3
B
134 159Right-handed alpha
Helix 31
AD4
B
161 167Right-handed alpha
Helix 32
AD5
B
169 194Right-handed alpha
Helix 33
AD6
B
196 201Right-handed alpha
Helix 34
AD7
B
214 222Right-handed alpha
Helix 35
AD8
B
227 236Right-handed alpha
Helix 36
AD9
B
271 279Right-handed alpha
Helix 37
AE1
B
279 288Right-handed alpha
Helix 38
AE2
B
301 312Right-handed alpha
Helix 39
AE3
B
314 316Right-handed 310
Helix 40
AE4
B
317 325Right-handed alpha
Helix 41
AE5
B
328 337Right-handed alpha
Helix 42
AE6
B
351 357Right-handed alpha
Helix 43
AE7
B
371 387Right-handed alpha
Helix 44
AE8
B
388 390Right-handed 310
Helix 45
AE9
B
415 437Right-handed alpha
Helix 46
AF1
B
456 461Right-handed 310
Helix 47
AF2
B
465 470Right-handed alpha
Helix 48
AF3
B
491 502Right-handed alpha
Helix 49
AF4
B
508 512Right-handed 310
Helix 50
AF5
B
570 581Right-handed alpha
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There are 7 sheets in PDB entry 6V8Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 345first strand
Strand 2
A
393 399parallel
Strand 3
A
262 267parallel
Strand 4
A
444 449parallel
Strand 5
A
473 476anti-parallel
Strand 6
A
290 292anti-parallel
Strand 7
A
483 485parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 296first strand
Strand 2
A
489 490parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 363first strand
Strand 2
B
413 414anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
528 532first strand
Strand 2
A
535 539anti-parallel
Strand 3
A
544 548anti-parallel
Strand 4
A
553 556anti-parallel
Strand 5
A
562 563anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
340 345first strand
Strand 2
B
393 399parallel
Strand 3
B
261 270parallel
Strand 4
B
443 452parallel
Strand 5
B
473 476anti-parallel
Strand 6
B
290 292anti-parallel
Strand 7
B
483 485parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
295 296first strand
Strand 2
B
489 490parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
528 532first strand
Strand 2
B
535 539anti-parallel
Strand 3
B
544 548anti-parallel
Strand 4
B
553 556anti-parallel
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