Analysis of interatomic Contacts of Structural Units in PDB entry:
6V93

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V93 entry

There are 7 chains in PDB entry 6V93 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 20	LEU 1501
D	MET 1	LEU 219
E	MET 1	LEU 219
F	LEU -1	ASP 486
G	MET 1	VAL 117
P	C 105	C 115
T	A 1	G 15

There are 64 helices in PDB entry 6V93. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	95	116	Right-handed alpha
Helix 2	AA2	A	165	167	Right-handed 310
Helix 3	AA3	A	168	177	Right-handed alpha
Helix 4	AA4	A	194	203	Right-handed alpha
Helix 5	AA5	A	228	233	Right-handed alpha
Helix 6	AA6	A	235	246	Right-handed alpha
Helix 7	AA7	A	307	322	Right-handed alpha
Helix 8	AA8	A	345	360	Right-handed alpha
Helix 9	AA9	A	385	390	Right-handed alpha
Helix 10	AB1	A	531	540	Right-handed alpha
Helix 11	AB2	A	554	558	Right-handed 310
Helix 12	AB3	A	612	622	Right-handed alpha
Helix 13	AB4	A	725	735	Right-handed alpha
Helix 14	AB5	A	744	760	Right-handed alpha
Helix 15	AB6	A	772	784	Right-handed alpha
Helix 16	AB7	A	789	794	Right-handed alpha
Helix 17	AB8	A	806	813	Right-handed alpha
Helix 18	AB9	A	826	834	Right-handed alpha
Helix 19	AC1	A	840	849	Right-handed alpha
Helix 20	AC2	A	857	866	Right-handed alpha
Helix 21	AC3	A	870	895	Right-handed alpha
Helix 22	AC4	A	896	909	Right-handed alpha
Helix 23	AC5	A	912	916	Right-handed 310
Helix 24	AC6	A	920	934	Right-handed alpha
Helix 25	AC7	A	943	949	Right-handed alpha
Helix 26	AC8	A	978	987	Right-handed alpha
Helix 27	AC9	A	1019	1024	Right-handed alpha
Helix 28	AD1	A	1044	1065	Right-handed alpha
Helix 29	AD2	A	1071	1095	Right-handed alpha
Helix 30	AD3	A	1106	1129	Right-handed alpha
Helix 31	AD4	A	1157	1171	Right-handed alpha
Helix 32	AD5	A	1224	1242	Right-handed alpha
Helix 33	AD6	A	1243	1261	Right-handed alpha
Helix 34	AD7	A	1286	1299	Right-handed alpha
Helix 35	AD8	A	1322	1327	Right-handed alpha
Helix 36	AD9	A	1329	1336	Right-handed alpha
Helix 37	AE1	A	1342	1361	Right-handed alpha
Helix 38	AE2	A	1366	1372	Right-handed alpha
Helix 39	AE3	A	1423	1450	Right-handed alpha
Helix 40	AE4	A	1450	1455	Right-handed alpha
Helix 41	AE5	A	1460	1466	Right-handed alpha
Helix 42	AE6	A	1473	1487	Right-handed alpha
Helix 43	AE7	D	2	24	Right-handed alpha
Helix 44	AE8	D	51	68	Right-handed alpha
Helix 45	AE9	D	109	129	Right-handed alpha
Helix 46	AF1	E	4	24	Right-handed alpha
Helix 47	AF2	E	28	30	Right-handed 310
Helix 48	AF3	E	51	69	Right-handed alpha
Helix 49	AF4	E	109	129	Right-handed alpha
Helix 50	AF5	E	164	175	Right-handed alpha
Helix 51	AF6	F	0	10	Right-handed alpha
Helix 52	AF7	F	52	76	Right-handed alpha
Helix 53	AF8	F	115	125	Right-handed alpha
Helix 54	AF9	F	132	138	Right-handed alpha
Helix 55	AG1	F	227	241	Right-handed alpha
Helix 56	AG2	F	247	252	Right-handed alpha
Helix 57	AG3	F	272	291	Right-handed alpha
Helix 58	AG4	F	321	325	Right-handed 310
Helix 59	AG5	F	357	364	Right-handed alpha
Helix 60	AG6	F	391	405	Right-handed alpha
Helix 61	AG7	F	411	416	Right-handed alpha
Helix 62	AG8	G	3	15	Right-handed alpha
Helix 63	AG9	G	22	30	Right-handed alpha
Helix 64	AH1	G	32	45	Right-handed alpha

There are 22 sheets in PDB entry 6V93. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	210	213	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	35	first strand
Strand 2	A	56	64	anti-parallel
Strand 3	A	70	75	anti-parallel
Strand 4	A	267	270	parallel
Strand 5	A	217	218	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	163	first strand
Strand 2	A	137	147	anti-parallel
Strand 3	A	937	938	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	189	first strand
Strand 2	A	940	941	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	522	first strand
Strand 2	D	139	146	anti-parallel
Strand 3	D	74	81	anti-parallel
Strand 4	D	87	94	anti-parallel
Strand 5	D	213	216	anti-parallel
Strand 6	D	200	201	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	581	582	first strand
Strand 2	D	37	38	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	177	179	first strand
Strand 2	A	600	606	anti-parallel
Strand 3	E	144	149	anti-parallel
Strand 4	E	72	80	anti-parallel
Strand 5	E	87	94	anti-parallel
Strand 6	E	211	214	anti-parallel
Strand 7	E	205	206	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	739	742	first strand
Strand 2	A	712	717	parallel
Strand 3	A	696	698	anti-parallel
Strand 4	A	669	672	anti-parallel
Strand 5	A	763	766	parallel
Strand 6	A	822	825	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	675	676	first strand
Strand 2	A	691	693	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	966	967	first strand
Strand 2	A	1184	1192	anti-parallel
Strand 3	A	971	976	anti-parallel
Strand 4	A	1179	1180	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1137	1140	first strand
Strand 2	A	1146	1149	anti-parallel
Strand 3	A	971	976	anti-parallel
Strand 4	A	1184	1192	anti-parallel
Strand 5	A	1195	1200	anti-parallel
Strand 6	A	1210	1214	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	994	997	first strand
Strand 2	A	1034	1037	anti-parallel
Strand 3	A	1027	1029	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1270	1273	first strand
Strand 2	A	1309	1312	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	33	first strand
Strand 2	D	48	49	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	37	first strand
Strand 2	E	41	49	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	198	199	first strand
Strand 2	E	217	218	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	24	first strand
Strand 2	G	109	110	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	88	89	first strand
Strand 2	F	102	103	parallel
Strand 3	F	176	177	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	172	173	first strand
Strand 2	F	106	109	anti-parallel
Strand 3	F	147	149	anti-parallel
Strand 4	F	154	157	anti-parallel
Strand 5	F	184	185	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	114	first strand
Strand 2	F	366	367	anti-parallel

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There are 10 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	336	338	first strand
Strand 2	F	295	298	parallel
Strand 3	F	254	259	parallel
Strand 4	F	213	217	parallel
Strand 5	F	469	474	anti-parallel
Strand 6	F	480	485	anti-parallel
Strand 7	G	64	67	parallel
Strand 8	G	53	60	anti-parallel
Strand 9	G	80	89	anti-parallel
Strand 10	G	20	21	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	343	347	first strand
Strand 2	F	350	355	anti-parallel
Strand 3	F	435	441	parallel
Strand 4	F	456	462	parallel
Strand 5	F	445	449	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V93

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V93