Analysis of interatomic Contacts of Structural Units in PDB entry:
6V9H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V9H entry

There are 5 chains in PDB entry 6V9H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6LYS 381
B
 SER 6ALA 379
C
 LEU 25LEU 294
D
 TYR 18CYS 112
E
 ASP 2GLN 106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 6V9H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 12Right-handed alpha
Helix 2
AA2
A
15 20Right-handed alpha
Helix 3
AA3
A
28 34Right-handed alpha
Helix 4
AA4
A
35 43Right-handed alpha
Helix 5
AA5
A
52 57Right-handed alpha
Helix 6
AA6
A
57 63Right-handed alpha
Helix 7
AA7
A
80 85Right-handed alpha
Helix 8
AA8
A
85 97Right-handed alpha
Helix 9
AA9
A
111 115Right-handed 310
Helix 10
AB1
A
147 164Right-handed alpha
Helix 11
AB2
A
165 169Right-handed 310
Helix 12
AB3
A
177 179Right-handed 310
Helix 13
AB4
A
180 190Right-handed alpha
Helix 14
AB5
A
199 204Right-handed alpha
Helix 15
AB6
A
245 267Right-handed alpha
Helix 16
AB7
A
283 287Right-handed 310
Helix 17
AB8
A
307 316Right-handed alpha
Helix 18
AB9
A
346 369Right-handed alpha
Helix 19
AC1
A
373 377Right-handed 310
Helix 20
AC2
B
7 12Right-handed alpha
Helix 21
AC3
B
15 20Right-handed alpha
Helix 22
AC4
B
22 26Right-handed 310
Helix 23
AC5
B
29 33Right-handed 310
Helix 24
AC6
B
35 43Right-handed alpha
Helix 25
AC7
B
52 57Right-handed alpha
Helix 26
AC8
B
57 63Right-handed alpha
Helix 27
AC9
B
78 85Right-handed alpha
Helix 28
AD1
B
85 97Right-handed alpha
Helix 29
AD2
B
111 115Right-handed 310
Helix 30
AD3
B
142 146Right-handed 310
Helix 31
AD4
B
147 163Right-handed alpha
Helix 32
AD5
B
164 165Right-handed 310
Helix 33
AD6
B
166 169Right-handed 310
Helix 34
AD7
B
177 179Right-handed 310
Helix 35
AD8
B
180 190Right-handed alpha
Helix 36
AD9
B
199 204Right-handed alpha
Helix 37
AE1
B
245 266Right-handed alpha
Helix 38
AE2
B
283 287Right-handed 310
Helix 39
AE3
B
301 305Right-handed 310
Helix 40
AE4
B
307 315Right-handed alpha
Helix 41
AE5
B
345 369Right-handed alpha
Helix 42
AE6
B
373 377Right-handed 310
Helix 43
AE7
C
32 36Right-handed 310
Helix 44
AE8
C
38 47Right-handed alpha
Helix 45
AE9
C
48 59Right-handed alpha
Helix 46
AF1
C
71 80Right-handed alpha
Helix 47
AF2
C
81 91Right-handed alpha
Helix 48
AF3
C
104 113Right-handed alpha
Helix 49
AF4
C
114 124Right-handed alpha
Helix 50
AF5
C
136 145Right-handed alpha
Helix 51
AF6
C
146 158Right-handed alpha
Helix 52
AF7
C
164 168Right-handed 310
Helix 53
AF8
C
169 177Right-handed alpha
Helix 54
AF9
C
179 190Right-handed alpha
Helix 55
AG1
C
201 210Right-handed alpha
Helix 56
AG2
C
211 221Right-handed alpha
Helix 57
AG3
C
234 239Right-handed 310
Helix 58
AG4
C
243 252Right-handed alpha
Helix 59
AG5
C
257 268Right-handed alpha
Helix 60
AG6
C
274 281Right-handed 310
Helix 61
AG7
C
284 293Right-handed alpha
Helix 62
AG8
D
32 37Right-handed alpha
Helix 63
AG9
D
39 45Right-handed alpha
Helix 64
AH1
D
66 83Right-handed alpha
Helix 65
AH2
D
96 111Right-handed alpha
Helix 66
AH3
E
23 36Right-handed alpha
Helix 67
AH4
E
38 40Right-handed 310
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There are 5 sheets in PDB entry 6V9H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 175first strand
Strand 2
A
216 220anti-parallel
Strand 3
A
225 229anti-parallel
Strand 4
A
235 242anti-parallel
Strand 5
A
126 135anti-parallel
Strand 6
A
292 297anti-parallel
Strand 7
A
334 338anti-parallel
Strand 8
A
317 320anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 274first strand
Strand 2
A
278 279anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 175first strand
Strand 2
B
216 220anti-parallel
Strand 3
B
225 229anti-parallel
Strand 4
B
235 242anti-parallel
Strand 5
B
126 135anti-parallel
Strand 6
B
292 297anti-parallel
Strand 7
B
334 338anti-parallel
Strand 8
B
317 320anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 274first strand
Strand 2
B
278 279anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 61first strand
Strand 2
D
19 22parallel
Strand 3
D
28 31anti-parallel
Strand 4
E
12 18parallel
Strand 5
E
3 9anti-parallel
Strand 6
E
73 79parallel
Strand 7
E
42 46anti-parallel
Strand 8
E
49 50anti-parallel
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