Analysis of interatomic Contacts of Structural Units in PDB entry:
6V9K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V9K entry

There are 2 chains in PDB entry 6V9K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 261GLU 570
B
 ALA 261GLU 570
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 6V9K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
279 287Right-handed alpha
Helix 2
AA2
A
297 301Right-handed 310
Helix 3
AA3
A
309 324Right-handed alpha
Helix 4
AA4
A
342 346Right-handed 310
Helix 5
AA5
A
352 356Right-handed 310
Helix 6
AA6
A
359 366Right-handed alpha
Helix 7
AA7
A
366 381Right-handed alpha
Helix 8
AA8
A
382 384Right-handed 310
Helix 9
AA9
A
395 417Right-handed alpha
Helix 10
AB1
A
432 438Right-handed alpha
Helix 11
AB2
A
438 444Right-handed alpha
Helix 12
AB3
A
452 461Right-handed alpha
Helix 13
AB4
A
470 474Right-handed 310
Helix 14
AB5
A
478 495Right-handed alpha
Helix 15
AB6
A
503 508Right-handed 310
Helix 16
AB7
A
511 519Right-handed alpha
Helix 17
AB8
A
526 528Right-handed 310
Helix 18
AB9
A
529 539Right-handed alpha
Helix 19
AC1
A
541 554Right-handed alpha
Helix 20
AC2
A
557 570Right-handed alpha
Helix 21
AC3
B
277 279Right-handed 310
Helix 22
AC4
B
280 287Right-handed alpha
Helix 23
AC5
B
297 301Right-handed 310
Helix 24
AC6
B
309 324Right-handed alpha
Helix 25
AC7
B
342 346Right-handed 310
Helix 26
AC8
B
352 356Right-handed 310
Helix 27
AC9
B
359 366Right-handed alpha
Helix 28
AD1
B
366 381Right-handed alpha
Helix 29
AD2
B
382 384Right-handed 310
Helix 30
AD3
B
395 417Right-handed alpha
Helix 31
AD4
B
432 438Right-handed alpha
Helix 32
AD5
B
438 443Right-handed alpha
Helix 33
AD6
B
452 461Right-handed alpha
Helix 34
AD7
B
470 474Right-handed 310
Helix 35
AD8
B
478 495Right-handed alpha
Helix 36
AD9
B
503 508Right-handed 310
Helix 37
AE1
B
511 519Right-handed alpha
Helix 38
AE2
B
526 528Right-handed 310
Helix 39
AE3
B
529 539Right-handed alpha
Helix 40
AE4
B
541 554Right-handed alpha
Helix 41
AE5
B
557 570Right-handed alpha
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There are 2 sheets in PDB entry 6V9K. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 275first strand
Strand 2
A
292 295parallel
Strand 3
A
328 332parallel
Strand 4
A
385 390parallel
Strand 5
A
425 430parallel
Strand 6
A
448 451parallel
Strand 7
A
498 501parallel
Strand 8
A
522 525parallel
Strand 9
A
270 275parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 275first strand
Strand 2
B
292 295parallel
Strand 3
B
328 332parallel
Strand 4
B
385 390parallel
Strand 5
B
425 430parallel
Strand 6
B
448 451parallel
Strand 7
B
498 501parallel
Strand 8
B
522 525parallel
Strand 9
B
270 275parallel
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